Gene detail

Detail information of MD15G1005400 Annotation

Gene ID	Annotation
MD15G1005400	Pseudouridine synthase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1005400	mRNA	Chr15	323132	324473	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G76120.1	1	Pseudouridine synthase family protein
Arabidopsis thaliana	AT1G76120.2	0.66	Pseudouridine synthase family protein
Prunus persica	Prupe.1G357900.1.p	1	Pseudouridine synthase family protein
Rosa multiflora	Rmu_co8307379.1_g000001.1	1	-
Rubus occidentalis	Ro02_G10406	1	-
Vitis vinifera	GSVIVT01008716001	1	Pseudouridine synthase family protein
Populus trichocarpa	Potri.002G014400.1	1	Pseudouridine synthase family protein
Populus trichocarpa	Potri.005G247000.1	0.747	Pseudouridine synthase family protein
Nicotiana benthamiana	Niben101Scf01493g02006.1	1	tRNA pseudouridine synthase 1
Nicotiana benthamiana	Niben101Scf01580g02014.1	0.869	tRNA pseudouridine(38/39) synthase
Zea mays	GRMZM2G112352_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0001522	pseudouridine synthesis	biological_process
GO:0009982	pseudouridine synthase activity	molecular_function
GO:0003723	RNA binding	molecular_function

KEGG

KO	Description	Enzyme
K06173	tRNA pseudouridine38-40 synthase	EC:5.4.99.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01416.16	PseudoU_synth_1	134	239	6.90E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.60916
SRR5252888	dormant buds	no	dormant buds(0 month)	10.799
SRR5252889	dormant buds	no	dormant buds(0 month)	12.5101
SRR5252886	dormant buds	no	dormant buds(1 months)	14.0838
SRR5252887	dormant buds	no	dormant buds(1 months)	13.8991
SRR5252884	dormant buds	no	dormant buds(2 months)	16.1432
SRR5252882	dormant buds	no	dormant buds(3 months)	14.3226
SRR5252883	dormant buds	no	dormant buds(3 months)	7.97311
SRR5252880	dormant buds	no	dormant buds(4 months)	13.6726
SRR5252881	dormant buds	no	dormant buds(4 months)	16.9006
SRR5252878	bud break	no	bud break	10.678
SRR5252879	bud break	no	bud break	12.7846
SRR3744766	flower	no	mature	4.597
SRR3744767	flower	no	mature	4.40397
SRR3744768	flower	no	mature	4.35846
SRR6308190	stigmas	no	open flowers	3.31475
SRR6308181	styles	no	open flowers	3.69102
SRR6308188	filaments	no	open flowers	6.66561
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.61441
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	9.0746
SRR6308194	sepals	no	open flowers	6.95803
SRR6308193	receptacles	no	open flowers	7.95629
SRR6308189	ovaries	no	open flowers	5.18737
SRR3384922	fruit	no	1 week after full bloom	18.1468
SRR3384921	fruit	no	2 week after full bloom	12.7007
SRR3384920	fruit	no	3 week after full bloom	7.01556
SRR3384919	fruit	no	4 week after full bloom	8.34232
SRR3384923	fruit	no	5 week after full bloom	5.18728
SRR3384918	fruit	no	6 week after full bloom	4.82341
SRR3384917	fruit	no	8 week after full bloom	4.7079
SRR3384916	fruit	no	10 week after full bloom	4.9055
SRR3384915	fruit	no	12 week after full bloom	4.74884
SRR3384914	fruit	no	14 week after full bloom	5.77539
SRR3384913	fruit	no	16 week after full bloom	8.78291
SRR3384912	fruit	no	18 week after full bloom	7.19182
SRR3384911	fruit	no	19 week after full bloom	6.43278
SRR3384910	fruit	no	20 week after full bloom	6.25034
SRR768128	whole fruit	no	25 days post anthesis	4.55374
SRR768129	whole fruit	no	35 days post anthesis	9.42437
SRR768130	whole fruit	no	60 days post anthesis	3.54713
SRR768131	whole fruit	no	87 days post anthesis	5.70399
SRR7343308	immature fruit flesh	no	immature	3.87747
SRR7343309	immature fruit flesh	no	immature	5.59152
SRR6320494	ripe fruit flesh	no	mature	5.74631
SRR5405143	ripe fruit peel	no	mature	5.78501
SRR6320572	ripe fruit peel	no	mature	2.83419
SRR7403504	fruit	uninfected	mature	4.04169
SRR7403506	fruit	uninfected	mature	4.01329
SRR7403507	fruit	uninfected	mature	4.35956
SRR7403500	fruit	infected with penicillium expansum	mature	4.70067
SRR7403501	fruit	infected with penicillium expansum	mature	4.0304
SRR7403508	fruit	infected with penicillium expansum	mature	3.35248
SRR7403502	fruit	infected with penicillium expansum	mature	5.35671
SRR7403503	fruit	infected with penicillium expansum	mature	6.46552
SRR7403505	fruit	infected with penicillium expansum	mature	5.03104
SRR1613973	Central seeds	no	20DAPF	19.7359
SRR1613974	Central seeds	no	20DAPF	17.0009
SRR1613975	Central seeds	no	20DAPF	19.5413
SRR1613976	Lateral seeds	no	20DAPF	17.3951
SRR1613977	Lateral seeds	no	20DAPF	18.2095
SRR1613978	Lateral seeds	no	20DAPF	18.4273
SRR3744786	stem	no	mature	6.38562
SRR3744787	stem	no	mature	6.48758
SRR3744772	stem	no	mature	6.23698
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.23525
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.82
SRR1089478	leaf	Virus-free	plantlets	4.60969
SRR1089477	leaf	ASGV-infected	plantlets	5.30936
SRR767660	leaf	uninfected	fully developed	6.7983
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.5398
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.45106
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.31945
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	15.9211
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.33316
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.92221
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.5856
SRR6308182	young leaf	no	immature leaves	13.273
SRR3744769	leaf	no	mature	4.51699
SRR3744770	leaf	no	mature	4.40494
SRR3744771	leaf	no	mature	4.70212
SRR5405145	leaf	no	mature	4.48404
SRR6320561	leaf	no	mature	5.11324