Gene detail

Detail information of MD15G1005800 Annotation

Gene ID	Annotation
MD15G1005800	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1005800	mRNA	Chr15	333698	336817	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID
Epigenetic Regulators	HMGB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G76110.1	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Prunus persica	Prupe.1G358300.1.p	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Pyrus communis	PCP043993.1	1	-
Pyrus x bretschneideri	Pbr005780.1	1	-
Rosa multiflora	Rmu_sc0012878.1_g000004.1	1	-
Fragaria vesca	mrna08596.1	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Vitis vinifera	GSVIVT01008723001	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Solanum lycopersicum	Solyc12g094440.1.1	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Populus trichocarpa	Potri.005G246700.1	1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Nicotiana benthamiana	Niben101Scf00807g03030.1	1	High mobility group B protein 9
Oryza sativa	LOC_Os09g37250.1	1	"high mobility group, putative"

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.17	ARID	39	121	1.70E-18
PF00505.15	HMG_box	255	322	4.00E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.45141
SRR5252888	dormant buds	no	dormant buds(0 month)	0.184017
SRR5252889	dormant buds	no	dormant buds(0 month)	0.284231
SRR5252886	dormant buds	no	dormant buds(1 months)	0.155838
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0828124
SRR5252884	dormant buds	no	dormant buds(2 months)	0.132251
SRR5252882	dormant buds	no	dormant buds(3 months)	0.530564
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0722674
SRR5252880	dormant buds	no	dormant buds(4 months)	0.39713
SRR5252881	dormant buds	no	dormant buds(4 months)	0.514264
SRR5252878	bud break	no	bud break	1.18666
SRR5252879	bud break	no	bud break	0.438626
SRR3744766	flower	no	mature	0.306422
SRR3744767	flower	no	mature	0.561129
SRR3744768	flower	no	mature	0.688017
SRR6308190	stigmas	no	open flowers	0.104978
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.115848
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.0895418
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.248362
SRR3384921	fruit	no	2 week after full bloom	0.806509
SRR3384920	fruit	no	3 week after full bloom	1.65701
SRR3384919	fruit	no	4 week after full bloom	0.546724
SRR3384923	fruit	no	5 week after full bloom	0.779896
SRR3384918	fruit	no	6 week after full bloom	0.289395
SRR3384917	fruit	no	8 week after full bloom	0.752061
SRR3384916	fruit	no	10 week after full bloom	1.24838
SRR3384915	fruit	no	12 week after full bloom	0.770643
SRR3384914	fruit	no	14 week after full bloom	0.747413
SRR3384913	fruit	no	16 week after full bloom	0.0733606
SRR3384912	fruit	no	18 week after full bloom	0.275381
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.1551
SRR768128	whole fruit	no	25 days post anthesis	1.04545
SRR768129	whole fruit	no	35 days post anthesis	0.246013
SRR768130	whole fruit	no	60 days post anthesis	2.3373
SRR768131	whole fruit	no	87 days post anthesis	0.103489
SRR7343308	immature fruit flesh	no	immature	0.733854
SRR7343309	immature fruit flesh	no	immature	0.366228
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0689121
SRR7403506	fruit	uninfected	mature	0.0363978
SRR7403507	fruit	uninfected	mature	0.172865
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0555158
SRR1613974	Central seeds	no	20DAPF	0.152563
SRR1613975	Central seeds	no	20DAPF	0.172606
SRR1613976	Lateral seeds	no	20DAPF	0.272339
SRR1613977	Lateral seeds	no	20DAPF	0.22121
SRR1613978	Lateral seeds	no	20DAPF	0.274149
SRR3744786	stem	no	mature	1.97765
SRR3744787	stem	no	mature	2.0137
SRR3744772	stem	no	mature	2.37614
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.06423
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.97247
SRR1089478	leaf	Virus-free	plantlets	3.33737
SRR1089477	leaf	ASGV-infected	plantlets	3.9756
SRR767660	leaf	uninfected	fully developed	3.62632
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.63285
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.24643
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	46.8671
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.942743
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.573
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.84959
SRR6308182	young leaf	no	immature leaves	0.676734
SRR3744769	leaf	no	mature	4.56658
SRR3744770	leaf	no	mature	4.04208
SRR3744771	leaf	no	mature	5.32068
SRR5405145	leaf	no	mature	18.9008
SRR6320561	leaf	no	mature	11.7014