Gene detail

Detail information of MD15G1011000 Annotation

Gene ID	Annotation
MD15G1011000	COP1-interacting protein 8

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1011000	mRNA	Chr15	607506	608787	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G64920.1	1	CIP8\|COP1-interacting protein 8
Pyrus communis	PCP025797.1	1	-
Pyrus x bretschneideri	Pbr005821.1	1	-
Vitis vinifera	GSVIVT01009934001	1	COP1-interacting protein 8
Solanum lycopersicum	Solyc09g074460.1.1	1	COP1-interacting protein 8
Nicotiana benthamiana	Niben101Scf07417g01006.1	1	RING finger protein 44
Nicotiana benthamiana	Niben101Scf00409g04002.1	0.825	RING finger protein 44
Oryza sativa	LOC_Os08g38060.1	1	"RING finger protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.2	zinc_ribbon_9	22	55	4.20E-10
PF13639.2	zf-RING_2	294	336	4.80E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	17.5896
SRR5252888	dormant buds	no	dormant buds(0 month)	3.93836
SRR5252889	dormant buds	no	dormant buds(0 month)	6.88359
SRR5252886	dormant buds	no	dormant buds(1 months)	10.1814
SRR5252887	dormant buds	no	dormant buds(1 months)	6.80963
SRR5252884	dormant buds	no	dormant buds(2 months)	6.85273
SRR5252882	dormant buds	no	dormant buds(3 months)	6.57409
SRR5252883	dormant buds	no	dormant buds(3 months)	3.5818
SRR5252880	dormant buds	no	dormant buds(4 months)	7.30656
SRR5252881	dormant buds	no	dormant buds(4 months)	8.52375
SRR5252878	bud break	no	bud break	8.61424
SRR5252879	bud break	no	bud break	11.1169
SRR3744766	flower	no	mature	29.4935
SRR3744767	flower	no	mature	29.2133
SRR3744768	flower	no	mature	30.5011
SRR6308190	stigmas	no	open flowers	20.1677
SRR6308181	styles	no	open flowers	14.6924
SRR6308188	filaments	no	open flowers	15.2445
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	32.6556
SRR6308192	pollen	no	open flowers	124.436
SRR6308191	petals	no	open flowers	19.2585
SRR6308194	sepals	no	open flowers	9.45957
SRR6308193	receptacles	no	open flowers	16.696
SRR6308189	ovaries	no	open flowers	17.8118
SRR3384922	fruit	no	1 week after full bloom	21.6823
SRR3384921	fruit	no	2 week after full bloom	23.4697
SRR3384920	fruit	no	3 week after full bloom	27.7985
SRR3384919	fruit	no	4 week after full bloom	22.1712
SRR3384923	fruit	no	5 week after full bloom	22.3146
SRR3384918	fruit	no	6 week after full bloom	29.1439
SRR3384917	fruit	no	8 week after full bloom	28.8039
SRR3384916	fruit	no	10 week after full bloom	23.2949
SRR3384915	fruit	no	12 week after full bloom	20.9068
SRR3384914	fruit	no	14 week after full bloom	18.9436
SRR3384913	fruit	no	16 week after full bloom	21.9818
SRR3384912	fruit	no	18 week after full bloom	20.7063
SRR3384911	fruit	no	19 week after full bloom	19.6367
SRR3384910	fruit	no	20 week after full bloom	20.7911
SRR768128	whole fruit	no	25 days post anthesis	17.0651
SRR768129	whole fruit	no	35 days post anthesis	16.8937
SRR768130	whole fruit	no	60 days post anthesis	20.5852
SRR768131	whole fruit	no	87 days post anthesis	20.1547
SRR7343308	immature fruit flesh	no	immature	24.8061
SRR7343309	immature fruit flesh	no	immature	28.478
SRR6320494	ripe fruit flesh	no	mature	18.9175
SRR5405143	ripe fruit peel	no	mature	13.1804
SRR6320572	ripe fruit peel	no	mature	48.3371
SRR7403504	fruit	uninfected	mature	10.9015
SRR7403506	fruit	uninfected	mature	10.4913
SRR7403507	fruit	uninfected	mature	10.5103
SRR7403500	fruit	infected with penicillium expansum	mature	25.3681
SRR7403501	fruit	infected with penicillium expansum	mature	28.2714
SRR7403508	fruit	infected with penicillium expansum	mature	28.1038
SRR7403502	fruit	infected with penicillium expansum	mature	26.2897
SRR7403503	fruit	infected with penicillium expansum	mature	24.1762
SRR7403505	fruit	infected with penicillium expansum	mature	23.3967
SRR1613973	Central seeds	no	20DAPF	16.8456
SRR1613974	Central seeds	no	20DAPF	15.1783
SRR1613975	Central seeds	no	20DAPF	19.9854
SRR1613976	Lateral seeds	no	20DAPF	17.0996
SRR1613977	Lateral seeds	no	20DAPF	18.384
SRR1613978	Lateral seeds	no	20DAPF	18.3093
SRR3744786	stem	no	mature	22.4769
SRR3744787	stem	no	mature	25.0345
SRR3744772	stem	no	mature	22.3789
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.1181
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.0188
SRR1089478	leaf	Virus-free	plantlets	28.1645
SRR1089477	leaf	ASGV-infected	plantlets	24.3437
SRR767660	leaf	uninfected	fully developed	26.1102
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.38219
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	28.6317
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	65.0072
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	31.6168
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	28.9282
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	37.9775
SRR6308182	young leaf	no	immature leaves	14.1036
SRR3744769	leaf	no	mature	32.1013
SRR3744770	leaf	no	mature	28.1204
SRR3744771	leaf	no	mature	28.5124
SRR5405145	leaf	no	mature	18.4121
SRR6320561	leaf	no	mature	34.3769