Gene detail

Detail information of MD15G1062400 Annotation

Gene ID	Annotation
MD15G1062400	Duplicated homeodomain-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1062400	mRNA	Chr15	4272733	4274001	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G416400.2.p	1	myb domain protein 68
Prunus persica	Prupe.1G416400.1.p	1	myb domain protein 68
Pyrus communis	PCP041037.1	1	-
Pyrus x bretschneideri	Pbr019808.1	1	-
Rosa multiflora	Rmu_sc0002348.1_g000005.1	1	-
Rubus occidentalis	Ro02_G04437	1	-
Fragaria vesca	mrna02652.1	1	myb domain protein 68
Vitis vinifera	GSVIVT01035332001	1	myb domain protein 68
Populus trichocarpa	Potri.006G234200.1	1	myb domain protein 68
Oryza sativa	LOC_Os01g52410.1	1	"myb-like DNA-binding domain containing protein, putative,expressed"
Zea mays	GRMZM2G001875_P01	1	R2R3MYB-domain protein

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
K09422	"transcription factor MYB, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	14	62	6.30E-14
PF00249.27	Myb_DNA-binding	69	111	2.70E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0462778
SRR5252888	dormant buds	no	dormant buds(0 month)	6.70894
SRR5252889	dormant buds	no	dormant buds(0 month)	9.06727
SRR5252886	dormant buds	no	dormant buds(1 months)	8.75911
SRR5252887	dormant buds	no	dormant buds(1 months)	9.81241
SRR5252884	dormant buds	no	dormant buds(2 months)	7.43341
SRR5252882	dormant buds	no	dormant buds(3 months)	5.23886
SRR5252883	dormant buds	no	dormant buds(3 months)	16.577
SRR5252880	dormant buds	no	dormant buds(4 months)	7.23935
SRR5252881	dormant buds	no	dormant buds(4 months)	5.58013
SRR5252878	bud break	no	bud break	5.20766
SRR5252879	bud break	no	bud break	1.44368
SRR3744766	flower	no	mature	0.471515
SRR3744767	flower	no	mature	0.489392
SRR3744768	flower	no	mature	0.53447
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.135361
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	1.3446
SRR6308189	ovaries	no	open flowers	0.109173
SRR3384922	fruit	no	1 week after full bloom	0.471667
SRR3384921	fruit	no	2 week after full bloom	0.81688
SRR3384920	fruit	no	3 week after full bloom	0.269729
SRR3384919	fruit	no	4 week after full bloom	0.24919
SRR3384923	fruit	no	5 week after full bloom	0.31597
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.380866
SRR3384916	fruit	no	10 week after full bloom	0.247388
SRR3384915	fruit	no	12 week after full bloom	0.292707
SRR3384914	fruit	no	14 week after full bloom	0.094628
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.58413
SRR768129	whole fruit	no	35 days post anthesis	0.869804
SRR768130	whole fruit	no	60 days post anthesis	1.66664
SRR768131	whole fruit	no	87 days post anthesis	0.156812
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	1.0587
SRR5405143	ripe fruit peel	no	mature	4.38163
SRR6320572	ripe fruit peel	no	mature	2.72802
SRR7403504	fruit	uninfected	mature	1.14947
SRR7403506	fruit	uninfected	mature	0.938284
SRR7403507	fruit	uninfected	mature	1.04852
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.112136
SRR1613973	Central seeds	no	20DAPF	11.5313
SRR1613974	Central seeds	no	20DAPF	13.7101
SRR1613975	Central seeds	no	20DAPF	12.6875
SRR1613976	Lateral seeds	no	20DAPF	13.0161
SRR1613977	Lateral seeds	no	20DAPF	11.8534
SRR1613978	Lateral seeds	no	20DAPF	11.2928
SRR3744786	stem	no	mature	4.67568
SRR3744787	stem	no	mature	5.37272
SRR3744772	stem	no	mature	5.75051
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0733904
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0900213
SRR1089478	leaf	Virus-free	plantlets	0.540789
SRR1089477	leaf	ASGV-infected	plantlets	1.11863
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.699006
SRR6308182	young leaf	no	immature leaves	0.225741
SRR3744769	leaf	no	mature	2.06763
SRR3744770	leaf	no	mature	2.47586
SRR3744771	leaf	no	mature	2.30322
SRR5405145	leaf	no	mature	0.322054
SRR6320561	leaf	no	mature	0