Gene detail

Detail information of MD15G1064600 Annotation

Gene ID	Annotation
MD15G1064600	Integrase-type DNA-binding superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0774	polarity specification of adaxial/abaxial axis maintenance of shoot apical meristem identity leaf morphogenesis gamete generation regulation of cell proliferation RNA interference cell wall macromolecule metabolic process flower morphogenesis xylem development xylem and phloem pattern formation regulation of organ morphogenesis plant-type cell wall organization regulation of cell adhesion methylation-dependent chromatin silencing meristem initiation determination of bilateral symmetry regulation of cell growth regulation of meristem growth inflorescence morphogenesis DNA methylation transpiration

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1064600	mRNA	Chr15	4496397	4499611	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	AP2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP016390.1	1	-
Pyrus x bretschneideri	Pbr019788.1	1	-
Rosa multiflora	Rmu_sc0000294.1_g000022.1	1	-
Rubus occidentalis	Ro02_G04415	1	-
Fragaria vesca	mrna02623.1	1	Integrase-type DNA-binding superfamily protein
Solanum lycopersicum	Solyc04g077490.2.1	1	Integrase-type DNA-binding superfamily protein
Solanum lycopersicum	Solyc03g123430.2.1	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.002G114800.1	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.005G148400.1	0.746	Integrase-type DNA-binding superfamily protein
Nicotiana benthamiana	Niben101Scf01774g10021.1	1	AP2-like ethylene-responsive transcription factor
Oryza sativa	LOC_Os03g56050.1	1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"
Zea mays	GRMZM2G028151_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K09285	"AP2-like factor, ANT lineage"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	294	349	1.90E-08
PF00847.16	AP2	394	443	1.50E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.51389
SRR5252888	dormant buds	no	dormant buds(0 month)	2.7607
SRR5252889	dormant buds	no	dormant buds(0 month)	3.92496
SRR5252886	dormant buds	no	dormant buds(1 months)	2.86929
SRR5252887	dormant buds	no	dormant buds(1 months)	1.0165
SRR5252884	dormant buds	no	dormant buds(2 months)	3.06633
SRR5252882	dormant buds	no	dormant buds(3 months)	2.71355
SRR5252883	dormant buds	no	dormant buds(3 months)	1.28131
SRR5252880	dormant buds	no	dormant buds(4 months)	11.1937
SRR5252881	dormant buds	no	dormant buds(4 months)	11.8734
SRR5252878	bud break	no	bud break	9.35096
SRR5252879	bud break	no	bud break	11.3164
SRR3744766	flower	no	mature	0.395817
SRR3744767	flower	no	mature	0.230724
SRR3744768	flower	no	mature	0.46287
SRR6308190	stigmas	no	open flowers	0.0720641
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0960687
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.0771105
SRR6308193	receptacles	no	open flowers	0.614991
SRR6308189	ovaries	no	open flowers	0.149969
SRR3384922	fruit	no	1 week after full bloom	2.6673
SRR3384921	fruit	no	2 week after full bloom	4.07872
SRR3384920	fruit	no	3 week after full bloom	1.41234
SRR3384919	fruit	no	4 week after full bloom	1.26752
SRR3384923	fruit	no	5 week after full bloom	0.567246
SRR3384918	fruit	no	6 week after full bloom	0.43413
SRR3384917	fruit	no	8 week after full bloom	0.455834
SRR3384916	fruit	no	10 week after full bloom	0.296083
SRR3384915	fruit	no	12 week after full bloom	0.0875805
SRR3384914	fruit	no	14 week after full bloom	0.0424703
SRR3384913	fruit	no	16 week after full bloom	0.0500229
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0900495
SRR3384910	fruit	no	20 week after full bloom	0.0352531
SRR768128	whole fruit	no	25 days post anthesis	2.34611
SRR768129	whole fruit	no	35 days post anthesis	3.97659
SRR768130	whole fruit	no	60 days post anthesis	0.939031
SRR768131	whole fruit	no	87 days post anthesis	0.706817
SRR7343308	immature fruit flesh	no	immature	0.750121
SRR7343309	immature fruit flesh	no	immature	0.498899
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.40452
SRR1613974	Central seeds	no	20DAPF	1.5126
SRR1613975	Central seeds	no	20DAPF	1.09761
SRR1613976	Lateral seeds	no	20DAPF	0.931084
SRR1613977	Lateral seeds	no	20DAPF	1.40453
SRR1613978	Lateral seeds	no	20DAPF	1.20191
SRR3744786	stem	no	mature	0.911403
SRR3744787	stem	no	mature	1.15083
SRR3744772	stem	no	mature	1.20521
SRX765691	seedling shoot apex	no	4-6 week old seedling	18.5556
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.40839
SRR1089478	leaf	Virus-free	plantlets	3.34159
SRR1089477	leaf	ASGV-infected	plantlets	3.79323
SRR767660	leaf	uninfected	fully developed	0.744198
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.43776
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.323096
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.105424
SRR6308182	young leaf	no	immature leaves	16.5299
SRR3744769	leaf	no	mature	0.158659
SRR3744770	leaf	no	mature	0.208428
SRR3744771	leaf	no	mature	0.184631
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0