Gene detail

Detail information of MD15G1078300 Annotation

Gene ID	Annotation
MD15G1078300	Granulin repeat cysteine protease family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0561	Receptor Like Cytoplasmic Kinase I serine/threonine-protein phosphatase 2A regulatory subunit B' mitochondrial chaperone BCS1 acetyl-CoA metabolic process brassinosteroid biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1078300	mRNA	Chr15	5343564	5346712	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G47128.1	1	RD21;RD21A\|responsive to dehydration 21;responsive to dehydration 21A
Prunus persica	Prupe.1G431000.1.p	1	Granulin repeat cysteine protease family protein
Pyrus communis	PCP005863.1	1	-
Pyrus x bretschneideri	Pbr019674.1	1	-
Rosa multiflora	Rmu_sc0020439.1_g000004.1	1	-
Rubus occidentalis	Ro02_G34913	1	-
Fragaria vesca	mrna09148.1	1	Granulin repeat cysteine protease family protein
Vitis vinifera	GSVIVT01009440001	1	Granulin repeat cysteine protease family protein
Solanum lycopersicum	Solyc12g088670.1.1	1	Granulin repeat cysteine protease family protein
Populus trichocarpa	Potri.014G024100.3	1	Granulin repeat cysteine protease family protein
Zea mays	GRMZM2G166281_P01	1	Cysteine protease 1

Gene Ontology

GO term	Description	Category
GO:0006508	proteolysis	biological_process
GO:0008234	cysteine-type peptidase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.8	Inhibitor_I29	49	105	9.10E-17
PF00112.19	Peptidase_C1	139	355	1.80E-82

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	110.03
SRR5252888	dormant buds	no	dormant buds(0 month)	46.3158
SRR5252889	dormant buds	no	dormant buds(0 month)	43.1633
SRR5252886	dormant buds	no	dormant buds(1 months)	48.317
SRR5252887	dormant buds	no	dormant buds(1 months)	55.0195
SRR5252884	dormant buds	no	dormant buds(2 months)	47.2339
SRR5252882	dormant buds	no	dormant buds(3 months)	37.4881
SRR5252883	dormant buds	no	dormant buds(3 months)	64.7294
SRR5252880	dormant buds	no	dormant buds(4 months)	45.8826
SRR5252881	dormant buds	no	dormant buds(4 months)	54.8016
SRR5252878	bud break	no	bud break	55.1557
SRR5252879	bud break	no	bud break	36.4914
SRR3744766	flower	no	mature	192.072
SRR3744767	flower	no	mature	190.467
SRR3744768	flower	no	mature	192.402
SRR6308190	stigmas	no	open flowers	306.858
SRR6308181	styles	no	open flowers	229.009
SRR6308188	filaments	no	open flowers	132.514
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	143.542
SRR6308192	pollen	no	open flowers	2.81279
SRR6308191	petals	no	open flowers	127.748
SRR6308194	sepals	no	open flowers	112.042
SRR6308193	receptacles	no	open flowers	59.0648
SRR6308189	ovaries	no	open flowers	135.683
SRR3384922	fruit	no	1 week after full bloom	69.5344
SRR3384921	fruit	no	2 week after full bloom	59.2967
SRR3384920	fruit	no	3 week after full bloom	59.201
SRR3384919	fruit	no	4 week after full bloom	54.0012
SRR3384923	fruit	no	5 week after full bloom	55.3753
SRR3384918	fruit	no	6 week after full bloom	59.3249
SRR3384917	fruit	no	8 week after full bloom	86.3548
SRR3384916	fruit	no	10 week after full bloom	86.7312
SRR3384915	fruit	no	12 week after full bloom	109.933
SRR3384914	fruit	no	14 week after full bloom	95.5417
SRR3384913	fruit	no	16 week after full bloom	104.693
SRR3384912	fruit	no	18 week after full bloom	103.476
SRR3384911	fruit	no	19 week after full bloom	139.724
SRR3384910	fruit	no	20 week after full bloom	182.163
SRR768128	whole fruit	no	25 days post anthesis	58.2028
SRR768129	whole fruit	no	35 days post anthesis	84.7586
SRR768130	whole fruit	no	60 days post anthesis	82.4755
SRR768131	whole fruit	no	87 days post anthesis	110.097
SRR7343308	immature fruit flesh	no	immature	112.658
SRR7343309	immature fruit flesh	no	immature	121.14
SRR6320494	ripe fruit flesh	no	mature	215.934
SRR5405143	ripe fruit peel	no	mature	168.489
SRR6320572	ripe fruit peel	no	mature	422.309
SRR7403504	fruit	uninfected	mature	161.185
SRR7403506	fruit	uninfected	mature	161.021
SRR7403507	fruit	uninfected	mature	159.767
SRR7403500	fruit	infected with penicillium expansum	mature	775.208
SRR7403501	fruit	infected with penicillium expansum	mature	751.581
SRR7403508	fruit	infected with penicillium expansum	mature	768.295
SRR7403502	fruit	infected with penicillium expansum	mature	590.634
SRR7403503	fruit	infected with penicillium expansum	mature	631.379
SRR7403505	fruit	infected with penicillium expansum	mature	617.548
SRR1613973	Central seeds	no	20DAPF	46.9156
SRR1613974	Central seeds	no	20DAPF	41.8919
SRR1613975	Central seeds	no	20DAPF	49.3807
SRR1613976	Lateral seeds	no	20DAPF	51.6733
SRR1613977	Lateral seeds	no	20DAPF	47.8435
SRR1613978	Lateral seeds	no	20DAPF	43.2715
SRR3744786	stem	no	mature	206.708
SRR3744787	stem	no	mature	204.781
SRR3744772	stem	no	mature	206.713
SRX765691	seedling shoot apex	no	4-6 week old seedling	34.4115
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	33.5828
SRR1089478	leaf	Virus-free	plantlets	164.16
SRR1089477	leaf	ASGV-infected	plantlets	167.284
SRR767660	leaf	uninfected	fully developed	275.131
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	119.973
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	200.023
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	310.476
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	156.004
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	378.944
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	434.97
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	433.477
SRR6308182	young leaf	no	immature leaves	41.8388
SRR3744769	leaf	no	mature	212.39
SRR3744770	leaf	no	mature	214.439
SRR3744771	leaf	no	mature	214.739
SRR5405145	leaf	no	mature	155.283
SRR6320561	leaf	no	mature	186.031