Gene detail

Detail information of MD15G1079900 Annotation

Gene ID	Annotation
MD15G1079900	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0037	monolayer-surrounded lipid storage body extracellular region terpenoid biosynthetic process lipid storage response to freezing nutrient reservoir activity activating transcription factor binding sucrose transmembrane transporter activity seed germination seed oilbody biogenesis sucrose synthase activity sucrose transport meristem structural organization seed dormancy process negative regulation of gibberellin biosynthetic process positive regulation of abscisic acid biosynthetic process sucrose biosynthetic process cellular response to abscisic acid stimulus sugar mediated signaling pathway integral component of plasma membrane

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1079900	mRNA	Chr15	5440126	5441348	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G49770.1	1	RGE1;ZOU\|RETARDED GROWTH OF EMBRYO 1;ZHOUPI
Prunus persica	Prupe.1G432900.1.p	1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Pyrus x bretschneideri	Pbr019660.1	1	-
Rosa multiflora	Rmu_sc0000077.1_g000033.1	1	-
Rubus occidentalis	Ro02_G21460	1	-
Fragaria vesca	mrna24577.1	1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Vitis vinifera	GSVIVT01031718001	1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Solanum lycopersicum	Solyc01g020170.1.1	0.772	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Solanum lycopersicum	Solyc01g107970.1.1	0.784	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Solanum lycopersicum	Solyc01g107960.2.1	1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Populus trichocarpa	Potri.014G025900.1	1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Nicotiana benthamiana	Niben101Scf06896g02005.1	1	Transcription factor bHLH95
Nicotiana benthamiana	Niben101Scf01350g04013.1	0.806	Transcription factor bHLH95
Oryza sativa	LOC_Os02g34320.1	1	"basic helix-loop-helix, putative"
Oryza sativa	LOC_Os04g35010.1	1	"helix-loop-helix DNA-binding domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.22	HLH	32	78	1.30E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0
SRR3744767	flower	no	mature	0
SRR3744768	flower	no	mature	0.0655493
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	3.40762
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.656488
SRR7403508	fruit	infected with penicillium expansum	mature	0.946514
SRR7403502	fruit	infected with penicillium expansum	mature	0.182948
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.734703
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0313441
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.0737065
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0.587621
SRR1089477	leaf	ASGV-infected	plantlets	0.911622
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.634156
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.38305
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.379453
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0.0799156
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0