Gene detail

Detail information of MD15G1088200 Annotation

Gene ID	Annotation
MD15G1088200	gibberellin 20 oxidase 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1088200	mRNA	Chr15	6153121	6156696	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G442200.1.p	1	gibberellin 20-oxidase 5
Pyrus communis	PCP003450.1	1	-
Pyrus x bretschneideri	Pbr008752.1	1	-
Rosa multiflora	Rmu_sc0007920.1_g000031.1	1	-
Rubus occidentalis	Ro02_G00648	1	-
Fragaria vesca	mrna09034.1	1	gibberellin 20-oxidase 3
Vitis vinifera	GSVIVT01008782001	1	gibberellin 20-oxidase 5
Vitis vinifera	GSVIVT01026453001	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Populus trichocarpa	Potri.005G184400.1	1	gibberellin 20 oxidase 2
Oryza sativa	LOC_Os01g66100.1	1	"gibberellin 20 oxidase 2, putative, expressed"
Oryza sativa	LOC_Os05g34854.1	1	"gibberellin 20 oxidase 2, putative, expressed"
Zea mays	GRMZM2G368411_P01	1	-
Zea mays	GRMZM2G049418_P01	0.839	-

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0005506	iron ion binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03171.16	2OG-FeII_Oxy	228	326	2.70E-25

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.631901
SRR5252886	dormant buds	no	dormant buds(1 months)	0.593927
SRR5252887	dormant buds	no	dormant buds(1 months)	0.315614
SRR5252884	dormant buds	no	dormant buds(2 months)	0.504035
SRR5252882	dormant buds	no	dormant buds(3 months)	0.337013
SRR5252883	dormant buds	no	dormant buds(3 months)	0.183617
SRR5252880	dormant buds	no	dormant buds(4 months)	1.1772
SRR5252881	dormant buds	no	dormant buds(4 months)	0.279994
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.185743
SRR3744766	flower	no	mature	0.0356262
SRR3744767	flower	no	mature	0
SRR3744768	flower	no	mature	0
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0.170776
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.189484
SRR768129	whole fruit	no	35 days post anthesis	0.728285
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	7.74028
SRR1613974	Central seeds	no	20DAPF	7.23537
SRR1613975	Central seeds	no	20DAPF	5.20693
SRR1613976	Lateral seeds	no	20DAPF	9.4582
SRR1613977	Lateral seeds	no	20DAPF	11.1353
SRR1613978	Lateral seeds	no	20DAPF	11.1195
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.108867
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0617489
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0302375
SRR1089478	leaf	Virus-free	plantlets	0.151071
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.993723
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.195311
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.0395187
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0