Gene detail

Detail information of MD15G1095800 Annotation

Gene ID	Annotation
MD15G1095800	D-arabinono-1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0273	L-gulonolactone oxidase activity male meiosis cytokinesis embryo sac cellularization radial microtubular system formation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1095800	mRNA	Chr15	6668202	6672470	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G11540.1	1	"AtGulLO3;GulLO3\|L -gulono-1,4-lactone ( L -GulL) oxidase 3"
Pyrus communis	PCP013616.1	1	-
Pyrus x bretschneideri	Pbr009220.1	1	-
Rosa multiflora	Rmu_sc0001809.1_g000053.1	1	-
Rubus occidentalis	Ro02_G00713	1	-
Fragaria vesca	mrna08810.1	1	"D-arabinono-1,4-lactone oxidase family protein"
Vitis vinifera	GSVIVT01035650001	1	"D-arabinono-1,4-lactone oxidase family protein"
Populus trichocarpa	Potri.018G039600.1	1	"D-arabinono-1,4-lactone oxidase family protein"
Nicotiana benthamiana	Niben101Scf06506g02016.1	1	"D-arabinono-1,4-lactone oxidase family protein LENGTH=585"
Oryza sativa	LOC_Os01g49360.1	1	"FAD-binding and arabino-lactone oxidase domains containingprotein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	molecular_function
GO:0050660	flavin adenine dinucleotide binding	molecular_function
GO:0016020	membrane	cellular component
GO:0055114	oxidation-reduction process	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.19	FAD_binding_4	61	193	9.90E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.63952
SRR5252888	dormant buds	no	dormant buds(0 month)	0.133671
SRR5252889	dormant buds	no	dormant buds(0 month)	0.051617
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0601557
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0960686
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0963516
SRR5252883	dormant buds	no	dormant buds(3 months)	0.104991
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.191556
SRR5252879	bud break	no	bud break	0.424829
SRR3744766	flower	no	mature	0.301496
SRR3744767	flower	no	mature	0.316411
SRR3744768	flower	no	mature	0.317566
SRR6308190	stigmas	no	open flowers	0.690238
SRR6308181	styles	no	open flowers	0.461877
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.102225
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.254021
SRR6308194	sepals	no	open flowers	0.164118
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.212774
SRR3384922	fruit	no	1 week after full bloom	0.1353
SRR3384921	fruit	no	2 week after full bloom	0.0488181
SRR3384920	fruit	no	3 week after full bloom	0.0429852
SRR3384919	fruit	no	4 week after full bloom	0.119136
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.0420411
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.045241
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.325904
SRR768129	whole fruit	no	35 days post anthesis	0.238594
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.266376
SRR7343309	immature fruit flesh	no	immature	1.06306
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.100211
SRR7403506	fruit	uninfected	mature	0.0793937
SRR7403507	fruit	uninfected	mature	0.188533
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.242524
SRR1613974	Central seeds	no	20DAPF	0.13885
SRR1613975	Central seeds	no	20DAPF	0.301616
SRR1613976	Lateral seeds	no	20DAPF	0.33709
SRR1613977	Lateral seeds	no	20DAPF	0.283776
SRR1613978	Lateral seeds	no	20DAPF	0.45792
SRR3744786	stem	no	mature	0.0206791
SRR3744787	stem	no	mature	0.0409105
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.295222
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.113406
SRR1089478	leaf	Virus-free	plantlets	0.0867853
SRR1089477	leaf	ASGV-infected	plantlets	0.403911
SRR767660	leaf	uninfected	fully developed	0.264131
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.5738
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.229282
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.224506
SRR6308182	young leaf	no	immature leaves	0.274842
SRR3744769	leaf	no	mature	0.0211451
SRR3744770	leaf	no	mature	0.0889266
SRR3744771	leaf	no	mature	0.0656547
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.113826