Detail information of MD15G1115600 Annotation
Gene IDAnnotation
MD15G1115600SPOC domain / Transcription elongation factor S-II protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0385DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]
serine/threonine-protein phosphatase 6 regulatory subunit 3

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD15G1115600mRNAChr1581347748141931-

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
----

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT5G25520.21SPOC domain / Transcription elongation factor S-II protein
Prunus persicaPrupe.7G018800.1.p1SPOC domain / Transcription elongation factor S-II protein
Prunus persicaPrupe.7G018800.4.p0.967SPOC domain / Transcription elongation factor S-II protein
Prunus persicaPrupe.7G018800.2.p0.906SPOC domain / Transcription elongation factor S-II protein
Prunus persicaPrupe.7G018800.3.p0.874SPOC domain / Transcription elongation factor S-II protein
Pyrus communisPCP025178.11-
Pyrus x bretschneideriPbr021120.11-
Rosa multifloraRmu_sc0008049.1_g000001.11-
Rubus occidentalisRo02_G147801-
Fragaria vescamrna01048.11SPOC domain / Transcription elongation factor S-II protein
Vitis viniferaGSVIVT010357230011SPOC domain / Transcription elongation factor S-II protein
Solanum lycopersicumSolyc08g067790.2.11SPOC domain / Transcription elongation factor S-II protein
Populus trichocarpaPotri.006G246800.11SPOC domain / Transcription elongation factor S-II protein
Populus trichocarpaPotri.018G034500.10.602SPOC domain / Transcription elongation factor S-II protein
Nicotiana benthamianaNiben101Scf00777g03020.11Transcription elongation factor A protein 1
Nicotiana benthamianaNiben101Scf04663g04002.10.877SPOC domain / Transcription elongation factor S-II protein LENGTH=873
Oryza sativaLOC_Os02g11780.11"transcription factor S-II, central domain containing protein, expressed"
Oryza sativaLOC_Os06g39480.11"SPOC domain containing protein, putative, expressed"
Zea maysGRMZM2G038374_P011-
Zea maysGRMZM2G022987_P010.772Putative SPOC domain / Transcription elongation factor S-II protein

Gene Ontology
GO termDescriptionCategory
GO:0005634nucleuscellular component
GO:0008270zinc ion bindingmolecular_function

KEGG
KODescriptionEnzyme
------

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF07500.10TFIIS_M4184995.40E-28
PF07744.9SPOC7638692.60E-10


Expression pattern
TOP