Gene detail

Detail information of MD15G1115700 Annotation

Gene ID	Annotation
MD15G1115700	RING/U-box superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0241	intracellular protein transport COPII vesicle coat myosin complex leaf pavement cell development mitochondrion localization peroxisome localization retrograde transport Golgi localization protein N-linked glycosylation gynoecium development cytosol membrane coat exocyst ER body organization actin filament-based movement motor activity clathrin binding vesicle-mediated transport sugar mediated signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1115700	mRNA	Chr15	8144432	8149484	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G32600.1	1	RING/U-box superfamily protein
Prunus persica	Prupe.1G467000.3.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.1G467000.2.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.1G467000.1.p	1	RING/U-box superfamily protein
Pyrus communis	PCP025177.1	1	-
Pyrus x bretschneideri	Pbr021119.2	1	-
Rosa multiflora	Rmu_sc0008049.1_g000004.1	1	-
Rubus occidentalis	Ro02_G14784	1	-
Fragaria vesca	mrna01049.1	1	RING/U-box superfamily protein
Vitis vinifera	GSVIVT01035722001	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.006G247000.1	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.018G034400.1	0.649	RING/U-box superfamily protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.2	zf-RING_2	344	386	2.30E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.50476
SRR5252888	dormant buds	no	dormant buds(0 month)	13.0583
SRR5252889	dormant buds	no	dormant buds(0 month)	13.6587
SRR5252886	dormant buds	no	dormant buds(1 months)	14.387
SRR5252887	dormant buds	no	dormant buds(1 months)	19.912
SRR5252884	dormant buds	no	dormant buds(2 months)	22.4145
SRR5252882	dormant buds	no	dormant buds(3 months)	15.3526
SRR5252883	dormant buds	no	dormant buds(3 months)	26.2888
SRR5252880	dormant buds	no	dormant buds(4 months)	11.2179
SRR5252881	dormant buds	no	dormant buds(4 months)	10.1231
SRR5252878	bud break	no	bud break	9.44737
SRR5252879	bud break	no	bud break	5.18769
SRR3744766	flower	no	mature	12.7609
SRR3744767	flower	no	mature	14.0557
SRR3744768	flower	no	mature	14.6182
SRR6308190	stigmas	no	open flowers	9.68192
SRR6308181	styles	no	open flowers	7.14076
SRR6308188	filaments	no	open flowers	5.63924
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	14.5564
SRR6308192	pollen	no	open flowers	8.82248
SRR6308191	petals	no	open flowers	9.2433
SRR6308194	sepals	no	open flowers	4.98518
SRR6308193	receptacles	no	open flowers	4.28651
SRR6308189	ovaries	no	open flowers	4.79717
SRR3384922	fruit	no	1 week after full bloom	5.21851
SRR3384921	fruit	no	2 week after full bloom	3.28737
SRR3384920	fruit	no	3 week after full bloom	3.30227
SRR3384919	fruit	no	4 week after full bloom	3.42745
SRR3384923	fruit	no	5 week after full bloom	4.69222
SRR3384918	fruit	no	6 week after full bloom	4.42594
SRR3384917	fruit	no	8 week after full bloom	3.91454
SRR3384916	fruit	no	10 week after full bloom	4.44965
SRR3384915	fruit	no	12 week after full bloom	3.62783
SRR3384914	fruit	no	14 week after full bloom	3.94756
SRR3384913	fruit	no	16 week after full bloom	5.66034
SRR3384912	fruit	no	18 week after full bloom	5.21708
SRR3384911	fruit	no	19 week after full bloom	7.4602
SRR3384910	fruit	no	20 week after full bloom	5.7699
SRR768128	whole fruit	no	25 days post anthesis	4.17365
SRR768129	whole fruit	no	35 days post anthesis	4.13062
SRR768130	whole fruit	no	60 days post anthesis	4.64854
SRR768131	whole fruit	no	87 days post anthesis	6.35531
SRR7343308	immature fruit flesh	no	immature	4.79983
SRR7343309	immature fruit flesh	no	immature	3.27636
SRR6320494	ripe fruit flesh	no	mature	7.26439
SRR5405143	ripe fruit peel	no	mature	5.9162
SRR6320572	ripe fruit peel	no	mature	5.68259
SRR7403504	fruit	uninfected	mature	7.48574
SRR7403506	fruit	uninfected	mature	9.48911
SRR7403507	fruit	uninfected	mature	8.88222
SRR7403500	fruit	infected with penicillium expansum	mature	41.6427
SRR7403501	fruit	infected with penicillium expansum	mature	43.75
SRR7403508	fruit	infected with penicillium expansum	mature	44.9431
SRR7403502	fruit	infected with penicillium expansum	mature	36.4748
SRR7403503	fruit	infected with penicillium expansum	mature	33.6469
SRR7403505	fruit	infected with penicillium expansum	mature	36.1098
SRR1613973	Central seeds	no	20DAPF	8.21947
SRR1613974	Central seeds	no	20DAPF	8.14991
SRR1613975	Central seeds	no	20DAPF	7.47587
SRR1613976	Lateral seeds	no	20DAPF	8.80428
SRR1613977	Lateral seeds	no	20DAPF	9.45948
SRR1613978	Lateral seeds	no	20DAPF	9.50221
SRR3744786	stem	no	mature	12.7759
SRR3744787	stem	no	mature	13.3153
SRR3744772	stem	no	mature	12.4106
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.38228
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.81661
SRR1089478	leaf	Virus-free	plantlets	7.41039
SRR1089477	leaf	ASGV-infected	plantlets	8.55838
SRR767660	leaf	uninfected	fully developed	7.26759
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.5479
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.93052
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.71146
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	12.5684
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.0093
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.70746
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.0764
SRR6308182	young leaf	no	immature leaves	3.75696
SRR3744769	leaf	no	mature	13.1661
SRR3744770	leaf	no	mature	12.195
SRR3744771	leaf	no	mature	12.9775
SRR5405145	leaf	no	mature	11.7172
SRR6320561	leaf	no	mature	12.7467