Gene detail

Detail information of MD15G1120900 Annotation

Gene ID	Annotation
MD15G1120900	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1120900	mRNA	Chr15	8688325	8689314	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G473500.1.p	1	ARM repeat superfamily protein
Pyrus communis	PCP030369.1	1	-
Pyrus x bretschneideri	Pbr025410.1	1	-
Rosa multiflora	Rmu_sc0004500.1_g000012.1	1	-
Rubus occidentalis	Ro02_G01637	1	-
Fragaria vesca	mrna11685.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.006G251000.1	1	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf01620g02005.1	1	U-box domain-containing protein 12
Nicotiana benthamiana	Niben101Scf00349g01008.1	0.725	U-box domain-containing protein 12

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0472354
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.0875666
SRR3744767	flower	no	mature	0.0769172
SRR3744768	flower	no	mature	0.0780348
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.177419
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.593439
SRR3384923	fruit	no	5 week after full bloom	0.161245
SRR3384918	fruit	no	6 week after full bloom	0.538495
SRR3384917	fruit	no	8 week after full bloom	0.129575
SRR3384916	fruit	no	10 week after full bloom	0.420821
SRR3384915	fruit	no	12 week after full bloom	0.0995821
SRR3384914	fruit	no	14 week after full bloom	0.676063
SRR3384913	fruit	no	16 week after full bloom	0.341267
SRR3384912	fruit	no	18 week after full bloom	1.49455
SRR3384911	fruit	no	19 week after full bloom	1.02389
SRR3384910	fruit	no	20 week after full bloom	0.240504
SRR768128	whole fruit	no	25 days post anthesis	0.115468
SRR768129	whole fruit	no	35 days post anthesis	0.380404
SRR768130	whole fruit	no	60 days post anthesis	0.425188
SRR768131	whole fruit	no	87 days post anthesis	0.640086
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.319521
SRR6320572	ripe fruit peel	no	mature	0.463693
SRR7403504	fruit	uninfected	mature	0.373245
SRR7403506	fruit	uninfected	mature	0.225302
SRR7403507	fruit	uninfected	mature	0.334385
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.39797
SRR1613974	Central seeds	no	20DAPF	3.78669
SRR1613975	Central seeds	no	20DAPF	4.82138
SRR1613976	Lateral seeds	no	20DAPF	3.57244
SRR1613977	Lateral seeds	no	20DAPF	4.69808
SRR1613978	Lateral seeds	no	20DAPF	5.0023
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0935588
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0183661
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.401396
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.69029
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.115116
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0