Detail information of MD15G1124400 Annotation
Gene IDAnnotation
MD15G1124400DEAD/DEAH box RNA helicase family protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0837ATP-dependent RNA helicase activity
double-stranded DNA binding
single-stranded DNA binding
double-stranded RNA binding
U4/U6.U5 tri-snRNP-associated protein 1
splicing factor U2AF 65 kDa subunit

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD15G1124400mRNAChr1590370439042547-

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
----

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT5G11170.11UAP56a|homolog of human UAP56 a
Arabidopsis thalianaAT5G11200.11UAP56b|homolog of human UAP56 b
Arabidopsis thalianaAT5G11200.30.701UAP56b|homolog of human UAP56 b
Prunus persicaPrupe.1G479900.6.p1DEAD/DEAH box RNA helicase family protein
Prunus persicaPrupe.1G479900.3.p1DEAD/DEAH box RNA helicase family protein
Prunus persicaPrupe.1G479900.4.p1DEAD/DEAH box RNA helicase family protein
Prunus persicaPrupe.1G479900.2.p1DEAD/DEAH box RNA helicase family protein
Prunus persicaPrupe.1G479900.1.p1DEAD/DEAH box RNA helicase family protein
Fragaria vescamrna11642.11DEAD/DEAH box RNA helicase family protein
Populus trichocarpaPotri.006G253100.11DEAD/DEAH box RNA helicase family protein
Populus trichocarpaPotri.018G028600.10.906DEAD/DEAH box RNA helicase family protein
Nicotiana benthamianaNiben101Scf01418g03019.11ATP-dependent RNA helicase SUB2
Oryza sativaLOC_Os01g36920.21"DEAD-box ATP-dependent RNA helicase, putative, expressed"
Oryza sativaLOC_Os01g36890.21"DEAD-box ATP-dependent RNA helicase, putative, expressed"
Zea maysGRMZM5G892645_P011Spliceosome RNA helicase BAT1 isoform 1; Spliceosome RNA helicase BAT1 isoform 2; Spliceosome RNA helicase BAT1 isoform 3

Gene Ontology
GO termDescriptionCategory
GO:0008026ATP-dependent helicase activitymolecular_function
GO:0003676nucleic acid bindingmolecular_function
GO:0005524ATP bindingmolecular_function

KEGG
KODescriptionEnzyme
K12812ATP-dependent RNA helicase UAP56/SUB2EC:3.6.4.13

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.25DEAD702352.80E-38


Expression pattern
TOP