Gene detail

Detail information of MD15G1124800 Annotation

Gene ID	Annotation
MD15G1124800	RNA-dependent RNA polymerase 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1124800	mRNA	Chr15	9057097	9062894	+

Sequences

CDS:

MD15G1124800

GCTCACACTCAGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACATTGTCTCGCTCCGAGTTCTCCAACTCAAGAGACAGTGAATATTTGTAGAGAAAATGGAATCTGAAGCAAGTGAAACTAGCACAGTGGTAACTCAACTTAGTTTTGGTGGATTTGGTAGACATGTGAAGGCAAGCGATCTTGTAACGTACTTGGAAGATGAAATTGGGCTTGTATATAGGTGCAGGTTGAAAACATCTTGGACCCCTCAAGAGTCCTTTCCAAATTTTGAGCTCATTGATCCTTCAAATATTGCAAGAACAAATGATTATATCATGGTGGAGCCTCATGCATTTGTGCATTTTGCCATGCCTGAGTCAGTAACTTTTGCTATGGATGCAGCAGGGCGTTCTCAACTCTTTTACAACAATGAACCATTGAAAGTAAGTTTGGGTCCTGAGAATCCATATTTCTTGAATAGGAGGAGGAGGGATAAAACTCCATTCAAGTTATCTGATGTATGTGTCGACATTGGAAGTTTAGTTCGTCAAGATGAGTTTTTTGTCGCTTGGAGAGGACCCACTTATGGTGTTGACTTTATTGTGGATCCTTTTGATGGAACATGCAAATTTTGTTTTACCAGAGACACTGCATTTTCATTTAAGGGGATAAAGAAGCATGCAGTCATTAAATGCGATTTTATGGTAGAGTTCTTGGTAAGAGACGTTTCTGAAATCAAGCAATACACAGATACTGCATATCATGTAATTCTGTTGCGGCTGGCTTCATCACCCTGGGTTTCGTATAGAACTGCTGATGATGACATTGACCAATCAGTCCCATTTAATCTGTTGGATGATGATGATCCTTGGATTAGAACCACGGATTTTACTCCTAGTGGGGCTATTGGGCGTTGTAATTGCTACAGAGTTTCAATACCCCCCCGACATGGTGCAAAGTTGAAGAGGACCATGGATTATCTTCGAGAACACAGGGTGCGGGAGGTTTGCCTCAAACGGCCTCCTAAGGTTCAAAACGAACCTGATTTTGGAATGCCTGCTTCGGATCCTTTCTTCTGTATTCATTATAAGGATGATATTTCGTTTGAGATAATGTTCTTGGTTAATGCAGTAATGCACAAGGGCATTTTTAATCAGCACCAGTTGTCGGACAGTTTCTTTGGTTTACTGAGGAGCCAACCAAAGGAGGTCAATGTGGCTGCATTGAAGCACTTGTGCACTTACAAGCACCCAGAATTTGATGCCTGTAAGAGACTGAAAGTTGTTCAAGATTGGTTGCTGAAGAACCCCAAGCTTTTCAAGGATCCTAAGCGATTGGATGACATTTCTGAAGTTAGGAGGTTGATTATCACCCCAACTAAAGCCTACTGTCTTCCGCCAGAGGTTGAACTTTCCAATAGGGTTCTTAGAAAGTATAAGGAAGTTGCTGATCGGTTCTTAAGGGTTACCTTTATGGATGAAGGTATGCAGACAATCAACTCTCATGTTCTGAACTCTTATGTTGCTCCTATTGTGAAGGAAATTATGACGAACGCCTCTCCTCAGAAAACAAATGTATTCAAAAGGGTGAAGACAATTTTGACTGACGGCTTTTACTTGTGTAGTCGTAAGTACTCTTTCTTGGCCTTCTCATCCAATCAATTGAAGGATCGTTCTGCCTGGTTTTTTGCTGAAGACATGAACATTGCTATCCTTGACATCAAAAAATGGATGGGAAAGTTCGCCAACAAAAATATTGCTAAATGTGCTGCTAGGATGGGCCTATGCTTTTCTTCTACATATGCAACGGTAGACGTTCCATTAAGTGAAGTTAATTTTGACCTTCCAGATATCAAGAGGAATGAGTATGATTTTTCTGATGGGATTGGTAAGATTACTCCTGACCTCGCAATGAAAGTCGCAGAGAAGTTGAAACTCGACAGAGATCCACCTTGTGCATATCAAATAAGATATGCTGGCTGTAAAGGGGTTGTGGCTTGTTGGCCATCCAATGGTGATGGGTACCGGCTTTCTTTAAGGCCTAGTATGAACAAGTTTAAGTCATGCCATACTATACTGGAAATTTGTTCTTGGACTAGGTTGCAGCCGGGTTTTCTAAACAGGCAGATCATCACATTACTTTCTGCACTAGATGTTCCAGATGAGATATTCTGGAGAAAGCAGGAGAGAATGGTTTTAAAGTTAAACCGGATGCTTGTGGACACAGATGTGGCATTTGATGTTCTCACTGGCTCTTGCGCTGAGCAAGGAAATGCAGCAGCTATAATGCTGAGTGCTGGTTTCAAGCCCCAGACAGAACCTCATCTACGGGGCATGTTAACCTGTATACGAGCCGCTCAGCTTTGGGGCCTTAGGGAAAAGGCTAGGATTTTTGTTCCTTCTGGAAGATGGCTTATGGGATGTCTAGATGAGCTAGGGGTACTTGAGCAAGGCCAGTGCTTTGTCCAAGTGTCTACCCCGTCACTACAGAATTGTTTTGCCAATCATGGCTCTAGGTTTGATAAGATTGAGAAGAATCTTCAAGTGATTAAGGGGCTTGTTGTGATAGCAAAGAATCCTTGCCTTCATCCTGGAGATATAAGGATTCTTGAAGCAGTTGATGCCCCTGAGTTACGCCACTTGCATGATTGCATTCTTTTCCCTCAGAAGGGTGATAGGCCCCACACAAATGAAGCTTCTGGAAGTGACCTCGATGGGGACCTTTACTTTGTTACTTGGGATGAAGATCTTATTCCCCCAAGTAAGAAGAGCTGGACTCCTATGATGTATGATCCTCAAGAAGCCAAACCTCATGGGCGTCCTATAACTCAGATGGATATTATAAATTTTTTTGCGAAAAACATGGTGAATGAGAACTTAGGGGCTATATGCAATGCACATGTGGTTCATGCTGACCGTAGTGATTATGGGGCTATGGATGAGAACTGCCTTCTATTAGCTGAGTATGCAGCATTAGCAGTTGATTTTCCGAAAACTGGAAAGACTGTTGCCTTGCCAGCACATCTAAAGCCGAAGATGTACCCTGATTTCATGGGGAAGGAGGAGCACCAGACGTACAAGTCAACTAAAATTTTGGGGCGACTATATCGCCACATTAGAGATGCTTATGACGAAGAAATGGCAACCTCTTTGGAGCTGAATTATACTCCTGGTGACATCCCATATGATATGGATCTGGAGATTCCTGGAGCCACTGATTTTATAGCTGACGCGTGGGAGAAAAAGTGCTCTTATGATGGCCAGGTGAAGGGTCTAATGGGGCAATACAAAGTTAAGAGAGAAGAAGAGATTGTTACTGGGCATGTTTGGTCCATCCCCAAATCCAACAGCAAGAAGCAAGGGGAGCTGAAGGAGCGGTTGAAGCAATCCTACGGTGCTCTTAAAAAAGAATTCAGGCTAATTTTTGAGAACAGGGATCCAAATATTGAATCTCTTACTGATGATGAGAAGAGTATACTGTATGAACAGAAGGCATCGGCATGGTACCAGGTGACTTACCACCCGAAATGGGTGAAAAGATCAATCCATTTGCAAGAGCCGGATGTTGCTGGAAATGTGGCGATGTTGAGCTTTGCCTGGATTACAGCGGACTACCTTGCACGAATCAAGATCAAGCGCCGCGGAGTGGAACATATTGATTCTCCGAAGCCTATCAACTCTTTGTCGAAGTACCTAGCTGATCGAATGTGAGCAGCATTGGAAGACCTAAGAGCCGTTTATTGCGGCATCTGGAAACCCTTGAGAGTTGTCCCATGTCTCTCCGTTAAACATCACGGCGACAAGGCCATTCTGCCAGTTTTATTAGCTTAAGTTTTATGTTTAATCTTTGTGTTTTTTGATTTCTCCTTTGGAAGTATGACTCGTTGAAGCTACTGGTTGATATCTTCAGAAACAAACCGAAATAGAAGTTCTGGGTTCCTA

Protein:

Gene family

Gene family	Subfamily
Epigenetic Regulators	RDR

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G49500.1	1	RDR6;SDE1;SGS2\|RNA-dependent RNA polymerase 6;SILENCING DEFECTIVE 1;SUPPRESSOR OF GENE SILENCING 2
Prunus persica	Prupe.1G480300.2.p	1	RNA-dependent RNA polymerase 6
Prunus persica	Prupe.1G480300.1.p	1	RNA-dependent RNA polymerase 6
Pyrus communis	PCP010107.1	1	-
Pyrus x bretschneideri	Pbr027837.1	1	-
Rosa multiflora	Rmu_sc0004221.1_g000009.1	1	-
Fragaria vesca	mrna11638.1	1	RNA-dependent RNA polymerase 6
Vitis vinifera	GSVIVT01035851001	1	RNA-dependent RNA polymerase 6
Solanum lycopersicum	Solyc04g014870.2.1	1	RNA-dependent RNA polymerase 6
Populus trichocarpa	Potri.006G253500.1	1	RNA-dependent RNA polymerase 6
Nicotiana benthamiana	Niben101Scf12609g01010.1	1	RNA-dependent RNA polymerase 6
Oryza sativa	LOC_Os01g34350.1	1	"RNA-dependent RNA polymerase, putative, expressed"
Zea mays	GRMZM2G145201_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003968	RNA-directed RNA polymerase activity	molecular_function

KEGG

KO	Description	Enzyme
K11699	RNA-dependent RNA polymerase	EC:2.7.7.48

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.22396
SRR5252888	dormant buds	no	dormant buds(0 month)	5.57356
SRR5252889	dormant buds	no	dormant buds(0 month)	6.04454
SRR5252886	dormant buds	no	dormant buds(1 months)	4.36857
SRR5252887	dormant buds	no	dormant buds(1 months)	4.24268
SRR5252884	dormant buds	no	dormant buds(2 months)	2.94034
SRR5252882	dormant buds	no	dormant buds(3 months)	2.99174
SRR5252883	dormant buds	no	dormant buds(3 months)	1.86286
SRR5252880	dormant buds	no	dormant buds(4 months)	4.90521
SRR5252881	dormant buds	no	dormant buds(4 months)	5.42091
SRR5252878	bud break	no	bud break	7.51978
SRR5252879	bud break	no	bud break	7.13729
SRR3744766	flower	no	mature	1.09472
SRR3744767	flower	no	mature	1.34837
SRR3744768	flower	no	mature	1.26952
SRR6308190	stigmas	no	open flowers	3.56817
SRR6308181	styles	no	open flowers	2.24659
SRR6308188	filaments	no	open flowers	2.65524
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.503716
SRR6308192	pollen	no	open flowers	0.778251
SRR6308191	petals	no	open flowers	0.985546
SRR6308194	sepals	no	open flowers	1.10187
SRR6308193	receptacles	no	open flowers	3.95502
SRR6308189	ovaries	no	open flowers	4.40772
SRR3384922	fruit	no	1 week after full bloom	1.8003
SRR3384921	fruit	no	2 week after full bloom	1.8188
SRR3384920	fruit	no	3 week after full bloom	0.934199
SRR3384919	fruit	no	4 week after full bloom	1.14488
SRR3384923	fruit	no	5 week after full bloom	1.75878
SRR3384918	fruit	no	6 week after full bloom	1.47308
SRR3384917	fruit	no	8 week after full bloom	1.18452
SRR3384916	fruit	no	10 week after full bloom	1.45135
SRR3384915	fruit	no	12 week after full bloom	0.993094
SRR3384914	fruit	no	14 week after full bloom	1.02336
SRR3384913	fruit	no	16 week after full bloom	1.70166
SRR3384912	fruit	no	18 week after full bloom	1.57474
SRR3384911	fruit	no	19 week after full bloom	1.14873
SRR3384910	fruit	no	20 week after full bloom	1.28251
SRR768128	whole fruit	no	25 days post anthesis	2.29345
SRR768129	whole fruit	no	35 days post anthesis	1.61717
SRR768130	whole fruit	no	60 days post anthesis	1.73348
SRR768131	whole fruit	no	87 days post anthesis	2.04085
SRR7343308	immature fruit flesh	no	immature	2.83323
SRR7343309	immature fruit flesh	no	immature	2.82507
SRR6320494	ripe fruit flesh	no	mature	1.47785
SRR5405143	ripe fruit peel	no	mature	2.42935
SRR6320572	ripe fruit peel	no	mature	1.19206
SRR7403504	fruit	uninfected	mature	1.09057
SRR7403506	fruit	uninfected	mature	1.2108
SRR7403507	fruit	uninfected	mature	1.25618
SRR7403500	fruit	infected with penicillium expansum	mature	0.345139
SRR7403501	fruit	infected with penicillium expansum	mature	0.29877
SRR7403508	fruit	infected with penicillium expansum	mature	0.430763
SRR7403502	fruit	infected with penicillium expansum	mature	0.570929
SRR7403503	fruit	infected with penicillium expansum	mature	0.797103
SRR7403505	fruit	infected with penicillium expansum	mature	1.02698
SRR1613973	Central seeds	no	20DAPF	9.99113
SRR1613974	Central seeds	no	20DAPF	8.33503
SRR1613975	Central seeds	no	20DAPF	7.79205
SRR1613976	Lateral seeds	no	20DAPF	6.94591
SRR1613977	Lateral seeds	no	20DAPF	5.93649
SRR1613978	Lateral seeds	no	20DAPF	6.91943
SRR3744786	stem	no	mature	1.36229
SRR3744787	stem	no	mature	1.45455
SRR3744772	stem	no	mature	1.54034
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.44729
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.14256
SRR1089478	leaf	Virus-free	plantlets	2.16327
SRR1089477	leaf	ASGV-infected	plantlets	2.45711
SRR767660	leaf	uninfected	fully developed	0.941049
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.24049
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.79668
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.506413
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.36802
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.921353
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.84806
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.999671
SRR6308182	young leaf	no	immature leaves	3.66749
SRR3744769	leaf	no	mature	1.21863
SRR3744770	leaf	no	mature	1.23754
SRR3744771	leaf	no	mature	1.59011
SRR5405145	leaf	no	mature	0.754411
SRR6320561	leaf	no	mature	0.914712