Gene detail

Detail information of MD15G1143900 Annotation

Gene ID	Annotation
MD15G1143900	Pectin lyase-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0107	polygalacturonase [EC:3.2.1.15] 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1143900	mRNA	Chr15	10625549	10627554	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G43880.1	1	Pectin lyase-like superfamily protein
Prunus persica	Prupe.7G269300.1.p	1	Pectin lyase-like superfamily protein
Pyrus communis	PCP043078.1	1	-
Pyrus x bretschneideri	Pbr036383.1	1	-
Rosa multiflora	Rmu_sc0002352.1_g000018.1	1	-
Rubus occidentalis	Ro01_G05001	1	-
Fragaria vesca	mrna10146.1	1	Pectin lyase-like superfamily protein
Solanum lycopersicum	Solyc08g014560.1.1	1	Pectin lyase-like superfamily protein
Solanum lycopersicum	Solyc08g014540.1.1	1	Pectin lyase-like superfamily protein
Nicotiana benthamiana	Niben101Scf12708g01004.1	1	Polygalacturonase

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0004650	polygalacturonase activity	molecular_function

KEGG

KO	Description	Enzyme
K01184	polygalacturonase	EC:3.2.1.15

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.13	Glyco_hydro_28	64	383	3.90E-83

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.08408
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.0902591
SRR3744767	flower	no	mature	0.0263607
SRR3744768	flower	no	mature	0
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0797402
SRR1613974	Central seeds	no	20DAPF	0.095871
SRR1613975	Central seeds	no	20DAPF	0.204537
SRR1613976	Lateral seeds	no	20DAPF	0.176029
SRR1613977	Lateral seeds	no	20DAPF	0.181563
SRR1613978	Lateral seeds	no	20DAPF	0.173724
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.013161
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0128698
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.08607
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.0809098
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0