Gene detail

Detail information of MD15G1147900 Annotation

Gene ID	Annotation
MD15G1147900	ribosomal protein L5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0863	structural constituent of ribosome translation cytosolic large ribosomal subunit 5S rRNA binding ribosome biogenesis large subunit ribosomal protein L32e small subunit ribosomal protein S23e large subunit ribosomal protein L32 large subunit ribosomal protein L44e large subunit ribosomal protein L5e adaxial/abaxial pattern specification small nuclear ribonucleoprotein D2 root morphogenesis nucleocytoplasmic transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1147900	mRNA	Chr15	10951444	10954344	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G25520.1	1	ATL5;OLI5;PGY3;RPL5A\|ribosomal protein L5;OLIGOCELLULA 5;PIGGYBACK3;RIBOSOMAL PROTEIN L5 A
Arabidopsis thaliana	AT5G39740.2	1	OLI7;RPL5B\|OLIGOCELLULA 7;ribosomal protein L5 B
Arabidopsis thaliana	AT5G39740.1	1	OLI7;RPL5B\|OLIGOCELLULA 7;ribosomal protein L5 B
Pyrus communis	PCP019339.1	1	-
Rosa multiflora	Rmu_sc0008647.1_g000012.1	1	-
Populus trichocarpa	Potri.014G174000.1	1	ribosomal protein L5 B
Populus trichocarpa	Potri.014G197100.1	1	ribosomal protein L5 B
Oryza sativa	LOC_Os01g67134.1	1	"ribosomal L18p/L5e family protein, putative, expressed"
Zea mays	GRMZM2G163081_P01	1	60S ribosomal protein L5-1;

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0008097	5S rRNA binding	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02932	large subunit ribosomal protein L5e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14204.2	Ribosomal_L18_c	192	280	1.00E-34

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	90.0668
SRR5252888	dormant buds	no	dormant buds(0 month)	50.8627
SRR5252889	dormant buds	no	dormant buds(0 month)	48.8599
SRR5252886	dormant buds	no	dormant buds(1 months)	47.1342
SRR5252887	dormant buds	no	dormant buds(1 months)	34.4282
SRR5252884	dormant buds	no	dormant buds(2 months)	43.8956
SRR5252882	dormant buds	no	dormant buds(3 months)	55.294
SRR5252883	dormant buds	no	dormant buds(3 months)	43.5519
SRR5252880	dormant buds	no	dormant buds(4 months)	74.0783
SRR5252881	dormant buds	no	dormant buds(4 months)	90.0468
SRR5252878	bud break	no	bud break	65.8681
SRR5252879	bud break	no	bud break	125.13
SRR3744766	flower	no	mature	26.0873
SRR3744767	flower	no	mature	26.0822
SRR3744768	flower	no	mature	28.3864
SRR6308190	stigmas	no	open flowers	13.1636
SRR6308181	styles	no	open flowers	22.1087
SRR6308188	filaments	no	open flowers	49.0523
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.52451
SRR6308192	pollen	no	open flowers	2.70058
SRR6308191	petals	no	open flowers	45.6638
SRR6308194	sepals	no	open flowers	29.5497
SRR6308193	receptacles	no	open flowers	65.3313
SRR6308189	ovaries	no	open flowers	40.1737
SRR3384922	fruit	no	1 week after full bloom	89.5406
SRR3384921	fruit	no	2 week after full bloom	65.8583
SRR3384920	fruit	no	3 week after full bloom	70.1236
SRR3384919	fruit	no	4 week after full bloom	61.3774
SRR3384923	fruit	no	5 week after full bloom	49.5345
SRR3384918	fruit	no	6 week after full bloom	43.1433
SRR3384917	fruit	no	8 week after full bloom	41.4621
SRR3384916	fruit	no	10 week after full bloom	36.2159
SRR3384915	fruit	no	12 week after full bloom	45.9058
SRR3384914	fruit	no	14 week after full bloom	39.2302
SRR3384913	fruit	no	16 week after full bloom	30.0011
SRR3384912	fruit	no	18 week after full bloom	27.4526
SRR3384911	fruit	no	19 week after full bloom	26.9286
SRR3384910	fruit	no	20 week after full bloom	24.247
SRR768128	whole fruit	no	25 days post anthesis	73.8855
SRR768129	whole fruit	no	35 days post anthesis	58.6713
SRR768130	whole fruit	no	60 days post anthesis	28.3275
SRR768131	whole fruit	no	87 days post anthesis	22.3767
SRR7343308	immature fruit flesh	no	immature	56.13
SRR7343309	immature fruit flesh	no	immature	65.5804
SRR6320494	ripe fruit flesh	no	mature	26.1568
SRR5405143	ripe fruit peel	no	mature	30.6972
SRR6320572	ripe fruit peel	no	mature	29.7777
SRR7403504	fruit	uninfected	mature	18.4926
SRR7403506	fruit	uninfected	mature	17.845
SRR7403507	fruit	uninfected	mature	16.735
SRR7403500	fruit	infected with penicillium expansum	mature	13.31
SRR7403501	fruit	infected with penicillium expansum	mature	16.3102
SRR7403508	fruit	infected with penicillium expansum	mature	11.4343
SRR7403502	fruit	infected with penicillium expansum	mature	13.2605
SRR7403503	fruit	infected with penicillium expansum	mature	11.8301
SRR7403505	fruit	infected with penicillium expansum	mature	11.3037
SRR1613973	Central seeds	no	20DAPF	74.2924
SRR1613974	Central seeds	no	20DAPF	73.5256
SRR1613975	Central seeds	no	20DAPF	74.0807
SRR1613976	Lateral seeds	no	20DAPF	69.2126
SRR1613977	Lateral seeds	no	20DAPF	74.5316
SRR1613978	Lateral seeds	no	20DAPF	73.355
SRR3744786	stem	no	mature	31.0446
SRR3744787	stem	no	mature	30.7579
SRR3744772	stem	no	mature	31.77
SRX765691	seedling shoot apex	no	4-6 week old seedling	71.4481
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	80.4507
SRR1089478	leaf	Virus-free	plantlets	18.8814
SRR1089477	leaf	ASGV-infected	plantlets	19.563
SRR767660	leaf	uninfected	fully developed	20.9229
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	24.0131
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	30.0715
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	24.7349
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	1.7086
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	21.846
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	21.4551
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	21.7978
SRR6308182	young leaf	no	immature leaves	94.598
SRR3744769	leaf	no	mature	30.2586
SRR3744770	leaf	no	mature	27.5477
SRR3744771	leaf	no	mature	29.8213
SRR5405145	leaf	no	mature	29.8176
SRR6320561	leaf	no	mature	28.5713