Gene detail

Detail information of MD15G1148000 Annotation

Gene ID	Annotation
MD15G1148000	ribosomal protein L5 B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0535	cytosolic large ribosomal subunit structural constituent of ribosome translation RNA methylation ribosome biogenesis large subunit ribosomal protein L13e nucleolus small subunit ribosomal protein S19e large subunit ribosomal protein L5e large subunit ribosomal protein L13Ae 5S rRNA binding phosphotransferase activity phosphate-containing compound metabolic process vacuole

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1148000	mRNA	Chr15	10955042	10958059	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G266900.1.p	1	ribosomal protein L5 B
Prunus persica	Prupe.7G266900.3.p	0.714	ribosomal protein L5 B
Prunus persica	Prupe.7G266900.2.p	0.714	ribosomal protein L5 B
Pyrus communis	PCP041610.1	1	-
Pyrus x bretschneideri	Pbr034203.1	1	-
Rosa multiflora	Rmu_co8484969.1_g000001.1	1	-
Rubus occidentalis	Ro04_G21733	1	-
Fragaria vesca	mrna10125.1	1	ribosomal protein L5
Vitis vinifera	GSVIVT01038188001	1	ribosomal protein L5 B
Solanum lycopersicum	Solyc06g082870.2.1	1	ribosomal protein L5
Populus trichocarpa	Potri.014G174000.1	1	ribosomal protein L5 B
Populus trichocarpa	Potri.014G197100.1	1	ribosomal protein L5 B
Nicotiana benthamiana	Niben101Scf01148g02008.1	1	60S ribosomal protein L5
Oryza sativa	LOC_Os01g67134.1	1	"ribosomal L18p/L5e family protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0008097	5S rRNA binding	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02932	large subunit ribosomal protein L5e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14204.2	Ribosomal_L18_c	191	280	1.20E-35

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	198.017
SRR5252888	dormant buds	no	dormant buds(0 month)	68.8593
SRR5252889	dormant buds	no	dormant buds(0 month)	71.9833
SRR5252886	dormant buds	no	dormant buds(1 months)	72.4846
SRR5252887	dormant buds	no	dormant buds(1 months)	50.9718
SRR5252884	dormant buds	no	dormant buds(2 months)	67.8349
SRR5252882	dormant buds	no	dormant buds(3 months)	76.5391
SRR5252883	dormant buds	no	dormant buds(3 months)	63.6891
SRR5252880	dormant buds	no	dormant buds(4 months)	93.5157
SRR5252881	dormant buds	no	dormant buds(4 months)	105.511
SRR5252878	bud break	no	bud break	67.937
SRR5252879	bud break	no	bud break	174.276
SRR3744766	flower	no	mature	39.6169
SRR3744767	flower	no	mature	39.9005
SRR3744768	flower	no	mature	39.4083
SRR6308190	stigmas	no	open flowers	36.7087
SRR6308181	styles	no	open flowers	53.5336
SRR6308188	filaments	no	open flowers	111.302
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	38.3083
SRR6308192	pollen	no	open flowers	34.2575
SRR6308191	petals	no	open flowers	94.5864
SRR6308194	sepals	no	open flowers	62.8604
SRR6308193	receptacles	no	open flowers	115.02
SRR6308189	ovaries	no	open flowers	75.6076
SRR3384922	fruit	no	1 week after full bloom	165.687
SRR3384921	fruit	no	2 week after full bloom	145.968
SRR3384920	fruit	no	3 week after full bloom	117.972
SRR3384919	fruit	no	4 week after full bloom	106.631
SRR3384923	fruit	no	5 week after full bloom	81.7664
SRR3384918	fruit	no	6 week after full bloom	87.9191
SRR3384917	fruit	no	8 week after full bloom	92.1551
SRR3384916	fruit	no	10 week after full bloom	76.4367
SRR3384915	fruit	no	12 week after full bloom	99.2734
SRR3384914	fruit	no	14 week after full bloom	78.8546
SRR3384913	fruit	no	16 week after full bloom	75.6875
SRR3384912	fruit	no	18 week after full bloom	71.1893
SRR3384911	fruit	no	19 week after full bloom	67.6631
SRR3384910	fruit	no	20 week after full bloom	59.8492
SRR768128	whole fruit	no	25 days post anthesis	109.248
SRR768129	whole fruit	no	35 days post anthesis	105.261
SRR768130	whole fruit	no	60 days post anthesis	61.1756
SRR768131	whole fruit	no	87 days post anthesis	51.5923
SRR7343308	immature fruit flesh	no	immature	73.5986
SRR7343309	immature fruit flesh	no	immature	85.8645
SRR6320494	ripe fruit flesh	no	mature	55.4471
SRR5405143	ripe fruit peel	no	mature	76.3651
SRR6320572	ripe fruit peel	no	mature	72.4995
SRR7403504	fruit	uninfected	mature	53.7926
SRR7403506	fruit	uninfected	mature	55.6791
SRR7403507	fruit	uninfected	mature	56.0395
SRR7403500	fruit	infected with penicillium expansum	mature	110.083
SRR7403501	fruit	infected with penicillium expansum	mature	112.397
SRR7403508	fruit	infected with penicillium expansum	mature	115.767
SRR7403502	fruit	infected with penicillium expansum	mature	94.9969
SRR7403503	fruit	infected with penicillium expansum	mature	91.8226
SRR7403505	fruit	infected with penicillium expansum	mature	94.9439
SRR1613973	Central seeds	no	20DAPF	155.168
SRR1613974	Central seeds	no	20DAPF	154.097
SRR1613975	Central seeds	no	20DAPF	165.769
SRR1613976	Lateral seeds	no	20DAPF	140.699
SRR1613977	Lateral seeds	no	20DAPF	166.721
SRR1613978	Lateral seeds	no	20DAPF	157.073
SRR3744786	stem	no	mature	43.28
SRR3744787	stem	no	mature	45.6268
SRR3744772	stem	no	mature	48.0234
SRX765691	seedling shoot apex	no	4-6 week old seedling	118.983
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	121.56
SRR1089478	leaf	Virus-free	plantlets	58.8297
SRR1089477	leaf	ASGV-infected	plantlets	56.181
SRR767660	leaf	uninfected	fully developed	46.8469
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	100.528
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	66.1085
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	58.1627
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	38.6596
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	38.7277
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	35.8554
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	38.7499
SRR6308182	young leaf	no	immature leaves	204.679
SRR3744769	leaf	no	mature	31.6047
SRR3744770	leaf	no	mature	32.3171
SRR3744771	leaf	no	mature	34.8925
SRR5405145	leaf	no	mature	43.5476
SRR6320561	leaf	no	mature	49.3407