Gene detail

Detail information of MD15G1158500 Annotation

Gene ID	Annotation
MD15G1158500	D111/G-patch domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1158500	mRNA	Chr15	11772377	11777198	-

Sequences

CDS:

MD15G1158500

AAAAAAAAAAAAACAAAGGAAAAGACCAGTCGCATCAGAGCTGTCCGCGCCACGAAGTCACCGACTGGTTCATCCTCCTCAACGGTGCGGATAGAACCGCACGCGTCCGTCGGACTGCAGATCCAAAAACTCTCATTATTTTTTCATCAGACCTTCTCTGTGTGGCGGCAACAGCGCAAAAGCTCAGAGCGCAGCCATGGCTGGAGGCAGAGGAAGAAGAAGACCCAACAGCAACGACAGCAGCAACTTAAATTGGAGCAGCGGTAGGAGAAGAGCATCGTCATCGTCGTCGTCAAAATCCAAATTTCGAGGAGGTCTGCTCGTGGAGGGCGGCGTTTTATCCGATTGGTCATACCCTCAAACCGCTCAGCGAGGGAAAAATCCGAGTTCGAGCAACAAATCTGCTACGAAATCTGTAGCAAAAGCAGCTTCTGGGTCGAAAAGTGATTCTCGGGGATCTAATGTTACCGCTATAGGGTTCCAATACCCTTCTGTTGAATTTCAGGAGGGTTTCTATTCAGAATTACGCAAGGGTAGTGATGCAGACAAAGATATGGACGAGTCATGCCCTTTGGTTTTAGTTGATTACAAGGATACCCAAATTTTAGCTCATGGGGACCAAACACAACCGTCAAGCCCCTATGAAGTGGAATTTACTTATCACTACGGTTCAAGTTTTGTGTTAGGTGAAAGCTCTCATAGAGGGCTAGGGTTCTCTGATGAACTTGAGGAAACCCCAAGTGGTGTTGAAGATTCCTCAAAGCAAATGGAAGAGCCAGAAGATTCATGTTTTAACTTGCAATCTTCTGAGAAACATATGGATGCCAATGATGGGATGGATTGTGAAGTTGGCGATGATGAGATGGCTGAAGAGATGACAACAGAGATGTTGTCGCCCAAGAGGAACTCAGGCTTTTTGTCAATTGGTGGCATGAGATTATACACCCAAGATATTTCTGATGAAGAAAGTGAAGAAGATGAAAATGGAGAGTCACTGTATGAAGGAAGCTCAGGCTCTTCTAAGTCTGGAGAACGACTTGGATCCTCTGAAAGTGAAGACTTGTCTGATAGTGATTCAGATATAGATGACGAGGTTGCAGACGATTATTTAGTGGGAATTGGTGGTAGTTACAACATCTTAAGTTCCAAATTTTTGGTGGAACAGGATTTGGATGAGCCGGATAAGAATAGCTCTTTGAGGAAGGGCTTTGATGAGACTTTGCAGAAGTTGGGCGGAATTGCTCTTCAGGATGCATCTAGGGAGTACGGTAGGAAGAAGGTCCAGTCACAAAAGAAATACAATGTGACTGAAAGACATGCTCGGTCTTTGGCTATAGATGACCTAATGCTTGTAAAGGATACAAGAAATTATTCCAAAAAGAAACCTGTTGCCAAATTTCCTCAGTCTTGGCCTGCAGAAGCTCAAAGGAGTAAATTCTCAAGACATTTTCCTGGGACAAAAAAGAAACATCGTAAAGAAATGATGGCTGTGAAGCGTAAGGAGAGAATGCTGCGCCAAGGTGTTGATCTTGAGCAAATAAATCTGAAAATGGAGCAAATTGTTTCAGATGCAGTAGATATGTTTTCTTTTCAGCCTATGCATTCCCGGGATTGTTCCCAGGTTCAGCGATTATCCGGAATGTATGGCCTGAGGAGTTCCTGCCAAGGATCTGGCAAGAAGAGATTTGTGACAGTGATGCAGACACAACACACTGGCATGCCATCTGCAAGTGATAGACTTTGTCTTGAAAAGCTGATTGGAGCTGACATGGAGGATGCTGATTTCTCTGTTGTTGAGCCTGGTAGAGACAAAAACAGGCCAAGGAAAATTGGAAAAGGAATTGATTTTAAGACACCGGAATCTAAACAATCCAGCCAAAGAAAGACGCCGAAAACGTCAGCCAAACGTGGCAGTGGGAATATGGATTCATATGCTAATACACCAGTATCATTTGTGTCAAGTGGCGTAATGCAATCAGCGGCTGAGGGTTTAACTGTTGACTCAATAGAAGCAAGTAAAAACAAGGTTGCTGCTGAGTCAACTGAATATCGTTCCTTTGAGGTACACACTAAGGGTTTTGGATCAAAAATGCTGGCTAAAATGGGATACATAGAAGGTGGTGGCTTAGGAAAAGATGGACAAGGTATGGCTGCACCCATCGAAGTGATCCAACGGCCTAAATCACTTGGCTTGGGTGTGGAATTCTCCACCCCCGTTGAGATCCCAGTCAGTAAAACACCCCCAGTAAAGAATATCCCGGTAAGAAGAAGATCTCAGGCTCAGAGTTCTCAAACTCAGAGTGAAAGAGTTGGATCTTTCGAAAAGCATACCAAAGGATTTGGATCGAAGATGATGGCGAAAATGGGTTTTGTTGAAGGCATGGGGTTGGGGAAAGATTCACAAGGCATTGTCTACCCTCTGGCTGCAGTCAGGCTACCGAAGTCGAGGGGATTAGGTACCTCAGGTTAAGTGAATTTTAATTTTAATTTATAATTGCTTACTTCTTCTTGTTCTAAATCTGCATATGCAATTATGCATGTGTATTATCATCAATATTAACTTAGAGGTTTTTTTATTCACCATAGATCTGTACATTCAATTTTTATCATTGAAAATAAAGCATGTGGCATGGTGACCATCAAAAGCCACCATGTGAGGTTTCTGTCTTTA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G09850.1	1	D111/G-patch domain-containing protein
Pyrus communis	PCP021593.1	1	-
Pyrus x bretschneideri	Pbr029166.1	1	-
Rosa multiflora	Rmu_ssc0000449.1_g000001.1	1	-
Rubus occidentalis	Ro01_G05109	1	-
Fragaria vesca	mrna30851.1	1	D111/G-patch domain-containing protein
Vitis vinifera	GSVIVT01012900001	1	D111/G-patch domain-containing protein
Solanum lycopersicum	Solyc07g007040.2.1	1	D111/G-patch domain-containing protein
Populus trichocarpa	Potri.018G113600.1	1	D111/G-patch domain-containing protein
Nicotiana benthamiana	Niben101Scf01576g03018.1	1	D111/G-patch domain-containing protein LENGTH=781
Nicotiana benthamiana	Niben101Scf07020g00013.1	0.881	D111/G-patch domain-containing protein LENGTH=781
Oryza sativa	LOC_Os08g19170.1	1	"G-patch domain containing protein, expressed"
Zea mays	GRMZM2G077757_P01	1	G-patch domain containing protein

Gene Ontology

GO term	Description	Category
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
K17569	G patch domain-containing protein 2	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01424.18	R3H	445	501	5.30E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.09556
SRR5252888	dormant buds	no	dormant buds(0 month)	11.1711
SRR5252889	dormant buds	no	dormant buds(0 month)	11.8974
SRR5252886	dormant buds	no	dormant buds(1 months)	9.68928
SRR5252887	dormant buds	no	dormant buds(1 months)	10.7438
SRR5252884	dormant buds	no	dormant buds(2 months)	14.1147
SRR5252882	dormant buds	no	dormant buds(3 months)	15.0654
SRR5252883	dormant buds	no	dormant buds(3 months)	10.9324
SRR5252880	dormant buds	no	dormant buds(4 months)	12.5079
SRR5252881	dormant buds	no	dormant buds(4 months)	11.4735
SRR5252878	bud break	no	bud break	9.94077
SRR5252879	bud break	no	bud break	9.48428
SRR3744766	flower	no	mature	6.46481
SRR3744767	flower	no	mature	6.54106
SRR3744768	flower	no	mature	6.63957
SRR6308190	stigmas	no	open flowers	4.25953
SRR6308181	styles	no	open flowers	4.02558
SRR6308188	filaments	no	open flowers	3.75378
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.08827
SRR6308192	pollen	no	open flowers	5.11014
SRR6308191	petals	no	open flowers	4.6473
SRR6308194	sepals	no	open flowers	6.11566
SRR6308193	receptacles	no	open flowers	4.3457
SRR6308189	ovaries	no	open flowers	3.56939
SRR3384922	fruit	no	1 week after full bloom	4.0424
SRR3384921	fruit	no	2 week after full bloom	3.32286
SRR3384920	fruit	no	3 week after full bloom	3.30243
SRR3384919	fruit	no	4 week after full bloom	4.12147
SRR3384923	fruit	no	5 week after full bloom	3.30865
SRR3384918	fruit	no	6 week after full bloom	3.9382
SRR3384917	fruit	no	8 week after full bloom	3.35418
SRR3384916	fruit	no	10 week after full bloom	3.45401
SRR3384915	fruit	no	12 week after full bloom	3.45801
SRR3384914	fruit	no	14 week after full bloom	3.35378
SRR3384913	fruit	no	16 week after full bloom	3.51926
SRR3384912	fruit	no	18 week after full bloom	2.52753
SRR3384911	fruit	no	19 week after full bloom	3.16762
SRR3384910	fruit	no	20 week after full bloom	4.07455
SRR768128	whole fruit	no	25 days post anthesis	3.37182
SRR768129	whole fruit	no	35 days post anthesis	3.09905
SRR768130	whole fruit	no	60 days post anthesis	2.69914
SRR768131	whole fruit	no	87 days post anthesis	4.21571
SRR7343308	immature fruit flesh	no	immature	4.12694
SRR7343309	immature fruit flesh	no	immature	5.01083
SRR6320494	ripe fruit flesh	no	mature	10.1731
SRR5405143	ripe fruit peel	no	mature	7.79319
SRR6320572	ripe fruit peel	no	mature	2.25453
SRR7403504	fruit	uninfected	mature	8.44918
SRR7403506	fruit	uninfected	mature	7.85428
SRR7403507	fruit	uninfected	mature	8.73218
SRR7403500	fruit	infected with penicillium expansum	mature	6.0271
SRR7403501	fruit	infected with penicillium expansum	mature	5.96272
SRR7403508	fruit	infected with penicillium expansum	mature	6.35427
SRR7403502	fruit	infected with penicillium expansum	mature	4.26256
SRR7403503	fruit	infected with penicillium expansum	mature	4.59955
SRR7403505	fruit	infected with penicillium expansum	mature	4.31577
SRR1613973	Central seeds	no	20DAPF	2.06545
SRR1613974	Central seeds	no	20DAPF	2.16915
SRR1613975	Central seeds	no	20DAPF	1.95199
SRR1613976	Lateral seeds	no	20DAPF	2.20947
SRR1613977	Lateral seeds	no	20DAPF	1.85941
SRR1613978	Lateral seeds	no	20DAPF	1.87923
SRR3744786	stem	no	mature	8.75682
SRR3744787	stem	no	mature	9.30321
SRR3744772	stem	no	mature	9.49768
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.67074
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.38571
SRR1089478	leaf	Virus-free	plantlets	0.527481
SRR1089477	leaf	ASGV-infected	plantlets	0.863785
SRR767660	leaf	uninfected	fully developed	2.49803
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.25988
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.10897
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.768216
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.853164
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.26394
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.12307
SRR6308182	young leaf	no	immature leaves	6.03478
SRR3744769	leaf	no	mature	9.27521
SRR3744770	leaf	no	mature	10.415
SRR3744771	leaf	no	mature	10.1855
SRR5405145	leaf	no	mature	7.70678
SRR6320561	leaf	no	mature	6.77641