Gene detail

Detail information of MD15G1172100 Annotation

Gene ID	Annotation
MD15G1172100	Ribosomal protein L36

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0974	sorting nexin-1/2 protein mago nashi small subunit ribosomal protein S7e large subunit ribosomal protein L36 retromer complex exon-exon junction complex multivesicular body small-subunit processome 90S preribosome protein binding structural constituent of ribosome B3

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1172100	mRNA	Chr15	13354561	13356337	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G20180.2	1	Ribosomal protein L36
Arabidopsis thaliana	AT5G20180.1	1	Ribosomal protein L36
Prunus persica	Prupe.7G244000.2.p	1	Ribosomal protein L36
Prunus persica	Prupe.7G244000.1.p	1	Ribosomal protein L36
Prunus persica	Prupe.7G066500.1.p	0.857	Ribosomal protein L36
Prunus persica	Prupe.7G066500.2.p	0.857	Ribosomal protein L36
Pyrus x bretschneideri	Pbr010643.1	1	-
Vitis vinifera	GSVIVT01015545001	1	Ribosomal protein L36
Solanum lycopersicum	Solyc07g008270.2.1	1	Ribosomal protein L36
Populus trichocarpa	Potri.006G069000.2	1	Ribosomal protein L36
Populus trichocarpa	Potri.018G131000.1	1	Ribosomal protein L36
Nicotiana benthamiana	Niben101Scf01233g00001.1	1	50S ribosomal protein L36
Nicotiana benthamiana	Niben101Scf03037g00008.1	0.859	50S ribosomal protein L36
Oryza sativa	LOC_Os03g59720.1	1	"ribosomal protein L36 containing protein, expressed"
Zea mays	GRMZM2G096165_P01	1	Ribosomal protein

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02919	large subunit ribosomal protein L36	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00444.14	Ribosomal_L36	1	38	2.00E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	14.8938
SRR5252888	dormant buds	no	dormant buds(0 month)	2.79826
SRR5252889	dormant buds	no	dormant buds(0 month)	6.61833
SRR5252886	dormant buds	no	dormant buds(1 months)	3.85085
SRR5252887	dormant buds	no	dormant buds(1 months)	9.12986
SRR5252884	dormant buds	no	dormant buds(2 months)	5.02772
SRR5252882	dormant buds	no	dormant buds(3 months)	3.52977
SRR5252883	dormant buds	no	dormant buds(3 months)	5.63206
SRR5252880	dormant buds	no	dormant buds(4 months)	3.52274
SRR5252881	dormant buds	no	dormant buds(4 months)	4.32903
SRR5252878	bud break	no	bud break	3.75938
SRR5252879	bud break	no	bud break	4.3077
SRR3744766	flower	no	mature	12.0218
SRR3744767	flower	no	mature	12.1527
SRR3744768	flower	no	mature	12.1941
SRR6308190	stigmas	no	open flowers	8.42253
SRR6308181	styles	no	open flowers	8.22401
SRR6308188	filaments	no	open flowers	11.1616
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.1616
SRR6308192	pollen	no	open flowers	5.96871
SRR6308191	petals	no	open flowers	4.96422
SRR6308194	sepals	no	open flowers	8.9986
SRR6308193	receptacles	no	open flowers	8.00821
SRR6308189	ovaries	no	open flowers	8.93596
SRR3384922	fruit	no	1 week after full bloom	31.1648
SRR3384921	fruit	no	2 week after full bloom	26.0671
SRR3384920	fruit	no	3 week after full bloom	23.9652
SRR3384919	fruit	no	4 week after full bloom	18.7101
SRR3384923	fruit	no	5 week after full bloom	20.2644
SRR3384918	fruit	no	6 week after full bloom	19.2572
SRR3384917	fruit	no	8 week after full bloom	21.1299
SRR3384916	fruit	no	10 week after full bloom	13.9311
SRR3384915	fruit	no	12 week after full bloom	14.6517
SRR3384914	fruit	no	14 week after full bloom	15.1574
SRR3384913	fruit	no	16 week after full bloom	16.5976
SRR3384912	fruit	no	18 week after full bloom	12.5655
SRR3384911	fruit	no	19 week after full bloom	18.4543
SRR3384910	fruit	no	20 week after full bloom	13.6629
SRR768128	whole fruit	no	25 days post anthesis	12.4364
SRR768129	whole fruit	no	35 days post anthesis	16.916
SRR768130	whole fruit	no	60 days post anthesis	12.7496
SRR768131	whole fruit	no	87 days post anthesis	7.44234
SRR7343308	immature fruit flesh	no	immature	13.9774
SRR7343309	immature fruit flesh	no	immature	4.19071
SRR6320494	ripe fruit flesh	no	mature	11.8759
SRR5405143	ripe fruit peel	no	mature	5.10907
SRR6320572	ripe fruit peel	no	mature	15.2192
SRR7403504	fruit	uninfected	mature	7.90037
SRR7403506	fruit	uninfected	mature	9.44914
SRR7403507	fruit	uninfected	mature	8.43491
SRR7403500	fruit	infected with penicillium expansum	mature	6.2438
SRR7403501	fruit	infected with penicillium expansum	mature	4.25719
SRR7403508	fruit	infected with penicillium expansum	mature	5.41584
SRR7403502	fruit	infected with penicillium expansum	mature	3.90808
SRR7403503	fruit	infected with penicillium expansum	mature	3.27376
SRR7403505	fruit	infected with penicillium expansum	mature	3.08285
SRR1613973	Central seeds	no	20DAPF	20.6314
SRR1613974	Central seeds	no	20DAPF	19.3547
SRR1613975	Central seeds	no	20DAPF	21.23
SRR1613976	Lateral seeds	no	20DAPF	20.1392
SRR1613977	Lateral seeds	no	20DAPF	24.5414
SRR1613978	Lateral seeds	no	20DAPF	20.6868
SRR3744786	stem	no	mature	8.91698
SRR3744787	stem	no	mature	7.50973
SRR3744772	stem	no	mature	10.3532
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.82487
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.60415
SRR1089478	leaf	Virus-free	plantlets	8.99313
SRR1089477	leaf	ASGV-infected	plantlets	7.84786
SRR767660	leaf	uninfected	fully developed	10.9318
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.30669
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	20.6033
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.65429
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.13978
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	9.58684
SRR6308182	young leaf	no	immature leaves	13.1611
SRR3744769	leaf	no	mature	8.78744
SRR3744770	leaf	no	mature	8.92093
SRR3744771	leaf	no	mature	9.53473
SRR5405145	leaf	no	mature	8.85437
SRR6320561	leaf	no	mature	9.94123