Detail information of MD15G1192900 Annotation
Gene IDAnnotation
MD15G1192900RING/U-box superfamily protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0056E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27]
xyloglucan galactosyltransferase MUR3 [EC:2.4.1.-]

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD15G1192900mRNAChr151521257215213879-

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
Ubiquitin FamilyRING

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Pyrus communisPCP017146.11-
Pyrus x bretschneideriPbr015493.11-
Oryza sativaLOC_Os02g35365.11"RING-H2 finger protein ATL3F, putative"
Oryza sativaLOC_Os02g35347.11"RING-H2 finger protein ATL3F, putative"
Oryza sativaLOC_Os02g35329.11"RING-H2 finger protein ATL3F, putative, expressed"

Gene Ontology
GO termDescriptionCategory
GO:0008270zinc ion bindingmolecular_function
GO:0005515protein bindingmolecular_function

KEGG
KODescriptionEnzyme
K10664E3 ubiquitin-protein ligase ATL6/9/15/31/42/55EC:2.3.2.27

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.2zf-RING_21261698.30E-13


Expression pattern
TOP