Gene detail

Detail information of MD15G1193000 Annotation

Gene ID	Annotation
MD15G1193000	RING/U-box superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1193000	mRNA	Chr15	15214605	15215909	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G28890.1	1	RING/U-box superfamily protein
Prunus persica	Prupe.7G224300.1.p	1	RING/U-box superfamily protein
Pyrus x bretschneideri	Pbr015494.1	1	-
Vitis vinifera	GSVIVT01015336001	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.006G239500.1	1	RING/U-box superfamily protein
Nicotiana benthamiana	Niben101Scf01322g01004.1	1	RING finger protein 44
Nicotiana benthamiana	Niben101Ctg15741g00002.1	1	RING finger protein 44
Nicotiana benthamiana	Niben101Scf09751g00010.1	0.801	RING finger protein 44
Oryza sativa	LOC_Os05g51780.1	1	"zinc finger, C3HC4 type domain containing protein, expressed"
Zea mays	GRMZM2G095025_P01	1	Putative RING zinc finger domain superfamily protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K10664	E3 ubiquitin-protein ligase ATL6/9/15/31/42/55	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.2	zf-RING_2	140	183	1.80E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.8193
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.078354
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0913156
SRR5252884	dormant buds	no	dormant buds(2 months)	0.145831
SRR5252882	dormant buds	no	dormant buds(3 months)	0.292521
SRR5252883	dormant buds	no	dormant buds(3 months)	0.239064
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.32404
SRR5252878	bud break	no	bud break	0.436169
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.123179
SRR3744767	flower	no	mature	0.0269849
SRR3744768	flower	no	mature	0.0544297
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0.298589
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.307551
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.127449
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.240083
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0.222336
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.0638236
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0598519
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.0686815
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.411508
SRR768129	whole fruit	no	35 days post anthesis	0.361518
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.228115
SRR7343308	immature fruit flesh	no	immature	0.404696
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.452618
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0401209
SRR7403507	fruit	uninfected	mature	0.0476368
SRR7403500	fruit	infected with penicillium expansum	mature	0.0981627
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.611631
SRR1613974	Central seeds	no	20DAPF	0.448219
SRR1613975	Central seeds	no	20DAPF	0.608527
SRR1613976	Lateral seeds	no	20DAPF	0.0900128
SRR1613977	Lateral seeds	no	20DAPF	0.371372
SRR1613978	Lateral seeds	no	20DAPF	0.302037
SRR3744786	stem	no	mature	0.0316857
SRR3744787	stem	no	mature	0.0627177
SRR3744772	stem	no	mature	0.25021
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0672724
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0131594
SRR1089478	leaf	Virus-free	plantlets	0.26263
SRR1089477	leaf	ASGV-infected	plantlets	0.407439
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.384132
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.44058
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.602793
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.169795
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.0970412
SRR3744770	leaf	no	mature	0.0341288
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0.234095
SRR6320561	leaf	no	mature	0.343517