Gene detail

Detail information of MD15G1194500 Annotation

Gene ID	Annotation
MD15G1194500	CDC27 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0131	intracellular transport ubiquitin conjugation factor E4 B [EC:2.3.2.27] nuclear pore complex protein Nup50 DNA topoisomerase I [EC:5.99.1.2] anaphase-promoting complex subunit 3

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1194500	mRNA	Chr15	15368270	15375744	+

Sequences

CDS:

MD15G1194500

GCCCTGGTTTGAACCCAAAACCAAAACCCCTCTCTCTCCTCTCCGAATCAGAGCAAGCAGCCATGGAAGCGATACTCCGAGACTGTGTCCAGCACAGTCTCCGCGATTTCATGCACCGAAACGCCATTTTCGTATGCGAACGCCTCTGCGCCGAGTTCCCCTCCGAGACGAATTTACAGTTGTTAGCTGGCTGTTACTTGCAAAGCAATCAAGCTTATGCTGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCCCGCTACTTGTTTGCAATATCATGCTTTCAGATGGATCTTCTTGGTGAAGCAGAAGCAGCGTTATGTCCTGCTAATGAGCCTGGTGCAGAGGTTCCAAATGGCGCAGCTGGTCATTACCTTCTGGGGCTTATATACAGGTATACTGACAGAAGGAAAAGTGCCATCCATCACTTTAAGCAGGCTTTGACTATGGATCCTTGTATGTGGGCTGCATATGAAGAGCTGTGCGTATTAGGCTCTGCTGAAGAAGCAGCTGTAGTTTTCGGTGAAGCTGCTGTTCTTTCCATACAAAAACAGTATCTACATCATGGATTAGCTTCTCAAAGTTTACTTACCCTGAATGAGGACTGCAGTTTAGTTTCTGGTAGGAACTTTAGTTCCGAAGACGTTAGCCAGAGACAATTCAAACATGTTCAAGGAAATAATATAAGAGATATGTCTGGAAGTTCTCATGTTAGTTTGGGAGGAGCTTCTGGTCAGCCTGTAAATGGCAGTTCTGGTTCATCTTTCTTTAACACTCCTTCACCAATGCCCATGCAGTTGTCAGGTGTTGCTCCACCAGCTCTGTGTAGAATTGGTCAGCCAAATGGCCCAAACCTAAACACAGGTACTGATAGCTCTCCAAAGTCAAATGTGAACTCTACAATTCAAGCCCCCAGAAGAAAGTTTGTTGATGAAGGAAAACTACGCAAGATTTCAAGCAGGTTGTCTTTTGATTCTGGCAACCGGCGGAGCAATAGACTTGCTGCTGAAGCAGGGACCAACACTAATGCAAGTGCCTCAGTGACAGCCGGAAATGGAACTACCAATTCATCTAAATATCTTGGAAGTTCCAAGTTGAGCTCTGTTGCGCGTTCCTTGGCAAATCGGAAGGGGCAGCCATGGGCCAATGAAAATGTTGATGAAGGAATGCGCAATGAGACATTCGATGATTCCCGTTCAACAACTGCGGCAGTAGCTTCTGGTTTCACTCCCTCTAGTGATGCCAGATATCTTGAACAAGAAGGAGCAACCTTGTCAAGTACTGGAGGTATTATCAATGTTTCAAGAGTTGCCACTGGTGCTTCAGAATTATTGAGTCTTTTGAGAACTCTCGGGGAAGGCTATAGACTTTCCTGCATGTACAGATGCCAGGATGCACTGGATGTCTATCTCAAACTTCCATACAAGCATTACAATACAGGATGGGTGCTTTCCCAGGTTGGAAAAGCTTACTGTGAATTGATAGACTATTCAGAAGCTGATCGGGCCTTCAGTCTTGCTCGTCAGGCATCACCTTACAGTTTAGAAGGAATGGATATGTATTCTACAGTTCTTTATCATTTGAAGGAAGATATGAAGTTAAGTTACCTGGCTCAAGAACTGATATCAACGGACCGCTTAGCTCCTCAGTCGTGGGTTGCAATGGGAAATTGTTATAGCTTGCAGAAAGACCATGAAACTGCTCTGAAATTTTTCCAGCGAGCAGTTCAAGTCAATTCAAGATTCACATATGCACATACCCTTTGCGGTCACGAATATGTAGCTCTAGAGGATTTTGAGAATGGAATAAAGAGCTATCAGACTGCACTTCGTATTGATGCAAGGCATTTTAACGCCTGGTATGGGCTTGGAATGGTTTATCATCGCCAAGAAAAGTTTGAGTTCTCAGAGCATCACTTCCGAACGGCTTTCCAAATTAACCCACGTTCTTCTGTTATTATGACGTATCTGGCCTCAGCACTGCATGCTTTAAAGAGAAGCGAAGAAGCTCTAGTGATGATGGAGAAAGCTATTAGAGCAGACAAGAAGAATCCACTTCCCATGTATCATAAGGCTAGTATACTAATGAGCTTAGAAAAATTTGATGAAGCTCTAGCAGTCTTAGAGGAGGTTAAAGAATATTCTCCTCGTGAAAGTAGTGTGTACGCTCTGATGGGTAAAATCTACAAGCGGCGTAATATGCACGAGAAGGCGATGCTTCATTTTGGTTATGCATTGGATTTGAAACCATCCGCAACTGATGTCGCTACCATTAAGGTGATTTGGGCATATTTCTTATTCTTTATTAACACCCACTATCGATAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G20000.1	1	CDC27b;HBT\|HOBBIT
Prunus persica	Prupe.7G222000.1.p	1	CDC27 family protein
Prunus persica	Prupe.7G222000.2.p	0.675	CDC27 family protein
Prunus persica	Prupe.7G222000.4.p	0.659	CDC27 family protein
Pyrus communis	PCP021877.1	1	-
Pyrus x bretschneideri	Pbr015508.1	1	-
Rosa multiflora	Rmu_sc0000897.1_g000018.1	1	-
Fragaria vesca	mrna11892.1	1	CDC27 family protein
Vitis vinifera	GSVIVT01015317001	1	CDC27 family protein
Solanum lycopersicum	Solyc03g061600.2.1	1	CDC27 family protein
Populus trichocarpa	Potri.018G086300.1	1	CDC27 family protein
Populus trichocarpa	Potri.006G164000.1	0.673	CDC27 family protein
Nicotiana benthamiana	Niben101Scf10980g00001.1	1	Cell division cycle protein 27 homolog B
Oryza sativa	LOC_Os06g41750.1	1	"tetratricopeptide repeat domain containing protein, expressed"
Zea mays	GRMZM2G392710_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0030154	cell differentiation	biological_process
GO:0051302	regulation of cell division	biological_process
GO:0005515	protein binding	molecular_function
GO:0005680	anaphase-promoting complex	cellular component

KEGG

KO	Description	Enzyme
K03350	anaphase-promoting complex subunit 3	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12895.3	ANAPC3	16	88	7.90E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.4193
SRR5252888	dormant buds	no	dormant buds(0 month)	5.23788
SRR5252889	dormant buds	no	dormant buds(0 month)	5.74418
SRR5252886	dormant buds	no	dormant buds(1 months)	5.23423
SRR5252887	dormant buds	no	dormant buds(1 months)	7.16584
SRR5252884	dormant buds	no	dormant buds(2 months)	5.42077
SRR5252882	dormant buds	no	dormant buds(3 months)	7.85307
SRR5252883	dormant buds	no	dormant buds(3 months)	10.0795
SRR5252880	dormant buds	no	dormant buds(4 months)	4.29551
SRR5252881	dormant buds	no	dormant buds(4 months)	5.35336
SRR5252878	bud break	no	bud break	4.65376
SRR5252879	bud break	no	bud break	6.15932
SRR3744766	flower	no	mature	1.19257
SRR3744767	flower	no	mature	1.35751
SRR3744768	flower	no	mature	1.20868
SRR6308190	stigmas	no	open flowers	1.56786
SRR6308181	styles	no	open flowers	1.0901
SRR6308188	filaments	no	open flowers	2.02363
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.33215
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.46294
SRR6308194	sepals	no	open flowers	1.29069
SRR6308193	receptacles	no	open flowers	1.54413
SRR6308189	ovaries	no	open flowers	1.92486
SRR3384922	fruit	no	1 week after full bloom	1.0603
SRR3384921	fruit	no	2 week after full bloom	1.79808
SRR3384920	fruit	no	3 week after full bloom	0.606348
SRR3384919	fruit	no	4 week after full bloom	0.560176
SRR3384923	fruit	no	5 week after full bloom	0.503127
SRR3384918	fruit	no	6 week after full bloom	0.230623
SRR3384917	fruit	no	8 week after full bloom	0.428091
SRR3384916	fruit	no	10 week after full bloom	0.401647
SRR3384915	fruit	no	12 week after full bloom	0.292446
SRR3384914	fruit	no	14 week after full bloom	0.319084
SRR3384913	fruit	no	16 week after full bloom	0.375828
SRR3384912	fruit	no	18 week after full bloom	0.47026
SRR3384911	fruit	no	19 week after full bloom	0.338276
SRR3384910	fruit	no	20 week after full bloom	0.735724
SRR768128	whole fruit	no	25 days post anthesis	2.13005
SRR768129	whole fruit	no	35 days post anthesis	0.935644
SRR768130	whole fruit	no	60 days post anthesis	0.627478
SRR768131	whole fruit	no	87 days post anthesis	1.12173
SRR7343308	immature fruit flesh	no	immature	1.46079
SRR7343309	immature fruit flesh	no	immature	2.49789
SRR6320494	ripe fruit flesh	no	mature	1.202
SRR5405143	ripe fruit peel	no	mature	2.79037
SRR6320572	ripe fruit peel	no	mature	0.348853
SRR7403504	fruit	uninfected	mature	1.39475
SRR7403506	fruit	uninfected	mature	1.47335
SRR7403507	fruit	uninfected	mature	1.47833
SRR7403500	fruit	infected with penicillium expansum	mature	5.88953
SRR7403501	fruit	infected with penicillium expansum	mature	5.04806
SRR7403508	fruit	infected with penicillium expansum	mature	6.08329
SRR7403502	fruit	infected with penicillium expansum	mature	6.71895
SRR7403503	fruit	infected with penicillium expansum	mature	5.39388
SRR7403505	fruit	infected with penicillium expansum	mature	6.0711
SRR1613973	Central seeds	no	20DAPF	2.42127
SRR1613974	Central seeds	no	20DAPF	3.11628
SRR1613975	Central seeds	no	20DAPF	2.61346
SRR1613976	Lateral seeds	no	20DAPF	2.20959
SRR1613977	Lateral seeds	no	20DAPF	2.20283
SRR1613978	Lateral seeds	no	20DAPF	2.3588
SRR3744786	stem	no	mature	2.16321
SRR3744787	stem	no	mature	2.34689
SRR3744772	stem	no	mature	2.43632
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.51219
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.44787
SRR1089478	leaf	Virus-free	plantlets	1.15779
SRR1089477	leaf	ASGV-infected	plantlets	0.845254
SRR767660	leaf	uninfected	fully developed	0.829278
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.45115
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.892623
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.450361
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.524085
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.528617
SRR6308182	young leaf	no	immature leaves	4.10746
SRR3744769	leaf	no	mature	1.38753
SRR3744770	leaf	no	mature	1.6128
SRR3744771	leaf	no	mature	1.4844
SRR5405145	leaf	no	mature	1.45285
SRR6320561	leaf	no	mature	0.536572