Gene detail

Detail information of MD15G1196700 Annotation

Gene ID	Annotation
MD15G1196700	translocase inner membrane subunit 17-2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1196700	mRNA	Chr15	15606726	15608568	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	MPT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37410.2	1	ATTIM17-2;TIM17;TIM17-2\|translocase inner membrane subunit 17-2;TRANSLOCASE OF THE INNER MEMBRANE 17
Arabidopsis thaliana	AT2G37410.1	1	ATTIM17-2;TIM17;TIM17-2\|translocase inner membrane subunit 17-2;TRANSLOCASE OF THE INNER MEMBRANE 17
Prunus persica	Prupe.4G283200.1.p	1	translocase inner membrane subunit 17-1
Prunus persica	Prupe.5G013800.1.p	0.822	translocase inner membrane subunit 17-1
Pyrus communis	PCP028131.1	1	-
Rosa multiflora	Rmu_sc0006034.1_g000002.1	1	-
Rubus occidentalis	Ro06_G24270	1	-
Rubus occidentalis	Ro05_G24172	1	-
Fragaria vesca	mrna21893.1	1	translocase inner membrane subunit 17-1
Populus trichocarpa	Potri.006G165000.1	1	translocase inner membrane subunit 17-2
Populus trichocarpa	Potri.T063400.1	0.991	translocase inner membrane subunit 17-2
Populus trichocarpa	Potri.018G087900.1	0.609	translocase inner membrane subunit 17-2
Oryza sativa	LOC_Os03g30200.1	1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"
Zea mays	GRMZM2G167463_P01	1	Mitochondrial import inner membrane translocase subunit Tim17
Zea mays	GRMZM2G321404_P01	0.808	-

Gene Ontology

GO term	Description	Category
GO:0006886	intracellular protein transport	biological_process
GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	molecular_function
GO:0005744	mitochondrial inner membrane presequence translocase complex	cellular component

KEGG

KO	Description	Enzyme
K17795	mitochondrial import inner membrane translocase subunit TIM17	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.46379
SRR5252888	dormant buds	no	dormant buds(0 month)	4.75489
SRR5252889	dormant buds	no	dormant buds(0 month)	4.59023
SRR5252886	dormant buds	no	dormant buds(1 months)	5.03345
SRR5252887	dormant buds	no	dormant buds(1 months)	5.21583
SRR5252884	dormant buds	no	dormant buds(2 months)	4.69879
SRR5252882	dormant buds	no	dormant buds(3 months)	6.42632
SRR5252883	dormant buds	no	dormant buds(3 months)	3.96812
SRR5252880	dormant buds	no	dormant buds(4 months)	4.70324
SRR5252881	dormant buds	no	dormant buds(4 months)	5.81363
SRR5252878	bud break	no	bud break	3.40696
SRR5252879	bud break	no	bud break	5.4308
SRR3744766	flower	no	mature	15.0285
SRR3744767	flower	no	mature	17.0587
SRR3744768	flower	no	mature	15.7729
SRR6308190	stigmas	no	open flowers	9.37405
SRR6308181	styles	no	open flowers	7.75293
SRR6308188	filaments	no	open flowers	9.53196
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.9016
SRR6308192	pollen	no	open flowers	10.1882
SRR6308191	petals	no	open flowers	7.56611
SRR6308194	sepals	no	open flowers	8.76637
SRR6308193	receptacles	no	open flowers	8.55857
SRR6308189	ovaries	no	open flowers	8.33773
SRR3384922	fruit	no	1 week after full bloom	30.1869
SRR3384921	fruit	no	2 week after full bloom	20.3001
SRR3384920	fruit	no	3 week after full bloom	28.7713
SRR3384919	fruit	no	4 week after full bloom	23.578
SRR3384923	fruit	no	5 week after full bloom	27.3773
SRR3384918	fruit	no	6 week after full bloom	30.0091
SRR3384917	fruit	no	8 week after full bloom	38.6015
SRR3384916	fruit	no	10 week after full bloom	33.2265
SRR3384915	fruit	no	12 week after full bloom	36.3051
SRR3384914	fruit	no	14 week after full bloom	32.0921
SRR3384913	fruit	no	16 week after full bloom	39.221
SRR3384912	fruit	no	18 week after full bloom	40.9212
SRR3384911	fruit	no	19 week after full bloom	44.5809
SRR3384910	fruit	no	20 week after full bloom	57.6193
SRR768128	whole fruit	no	25 days post anthesis	9.13799
SRR768129	whole fruit	no	35 days post anthesis	12.0154
SRR768130	whole fruit	no	60 days post anthesis	26.7862
SRR768131	whole fruit	no	87 days post anthesis	14.1635
SRR7343308	immature fruit flesh	no	immature	10.0876
SRR7343309	immature fruit flesh	no	immature	23.7116
SRR6320494	ripe fruit flesh	no	mature	52.847
SRR5405143	ripe fruit peel	no	mature	26.9746
SRR6320572	ripe fruit peel	no	mature	47.2591
SRR7403504	fruit	uninfected	mature	49.4753
SRR7403506	fruit	uninfected	mature	51.6768
SRR7403507	fruit	uninfected	mature	48.891
SRR7403500	fruit	infected with penicillium expansum	mature	57.6928
SRR7403501	fruit	infected with penicillium expansum	mature	55.7987
SRR7403508	fruit	infected with penicillium expansum	mature	52.5072
SRR7403502	fruit	infected with penicillium expansum	mature	56.7391
SRR7403503	fruit	infected with penicillium expansum	mature	57.2743
SRR7403505	fruit	infected with penicillium expansum	mature	61.6124
SRR1613973	Central seeds	no	20DAPF	18.9088
SRR1613974	Central seeds	no	20DAPF	16.1363
SRR1613975	Central seeds	no	20DAPF	18.6631
SRR1613976	Lateral seeds	no	20DAPF	20.9583
SRR1613977	Lateral seeds	no	20DAPF	21.0193
SRR1613978	Lateral seeds	no	20DAPF	18.8099
SRR3744786	stem	no	mature	16.1706
SRR3744787	stem	no	mature	17.7845
SRR3744772	stem	no	mature	16.2512
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.44444
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.33802
SRR1089478	leaf	Virus-free	plantlets	8.8082
SRR1089477	leaf	ASGV-infected	plantlets	7.27802
SRR767660	leaf	uninfected	fully developed	10.478
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	53.161
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	13.3618
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	20.0592
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.5581
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	18.3576
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.1468
SRR6308182	young leaf	no	immature leaves	5.62736
SRR3744769	leaf	no	mature	12.4011
SRR3744770	leaf	no	mature	12.2852
SRR3744771	leaf	no	mature	12.0324
SRR5405145	leaf	no	mature	10.9526
SRR6320561	leaf	no	mature	17.9663