Gene detail

Detail information of MD15G1201600 Annotation

Gene ID	Annotation
MD15G1201600	Ribosomal protein L6 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1201600	mRNA	Chr15	16036268	16038758	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G18540.1	1	Ribosomal protein L6 family protein
Prunus persica	Prupe.7G072900.1.p	1	Ribosomal protein L6 family protein
Pyrus communis	PCP013115.1	1	-
Pyrus x bretschneideri	Pbr015558.1	1	-
Rosa multiflora	Rmu_sc0002224.1_g000016.1	1	-
Rosa multiflora	Rmu_sc0010976.1_g000004.1	0.975	-
Rubus occidentalis	Ro06_G21950	1	-
Fragaria vesca	mrna00518.1	1	Ribosomal protein L6 family protein
Vitis vinifera	GSVIVT01032041001	1	Ribosomal protein L6 family protein
Solanum lycopersicum	Solyc05g054070.2.1	1	Ribosomal protein L6 family protein
Populus trichocarpa	Potri.001G271500.1	1	Ribosomal protein L6 family protein
Nicotiana benthamiana	Niben101Scf01958g03003.1	1	60S ribosomal protein L6
Oryza sativa	LOC_Os02g37862.1	1	"60S ribosomal protein L6, putative, expressed"
Oryza sativa	LOC_Os04g39700.1	1	"60S ribosomal protein L6, putative, expressed"
Zea mays	GRMZM2G003384_P01	1	60S ribosomal protein L6

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02934	large subunit ribosomal protein L6e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03868.11	Ribosomal_L6e_N	3	54	8.90E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	33.0824
SRR5252888	dormant buds	no	dormant buds(0 month)	17.807
SRR5252889	dormant buds	no	dormant buds(0 month)	15.1891
SRR5252886	dormant buds	no	dormant buds(1 months)	17.7811
SRR5252887	dormant buds	no	dormant buds(1 months)	14.2332
SRR5252884	dormant buds	no	dormant buds(2 months)	15.663
SRR5252882	dormant buds	no	dormant buds(3 months)	17.6248
SRR5252883	dormant buds	no	dormant buds(3 months)	19.2053
SRR5252880	dormant buds	no	dormant buds(4 months)	33.0763
SRR5252881	dormant buds	no	dormant buds(4 months)	39.0477
SRR5252878	bud break	no	bud break	23.6137
SRR5252879	bud break	no	bud break	44.768
SRR3744766	flower	no	mature	6.1018
SRR3744767	flower	no	mature	5.39236
SRR3744768	flower	no	mature	6.47591
SRR6308190	stigmas	no	open flowers	4.65717
SRR6308181	styles	no	open flowers	6.70424
SRR6308188	filaments	no	open flowers	23.3209
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.59494
SRR6308192	pollen	no	open flowers	4.56818
SRR6308191	petals	no	open flowers	17.2292
SRR6308194	sepals	no	open flowers	10.2782
SRR6308193	receptacles	no	open flowers	24.586
SRR6308189	ovaries	no	open flowers	12.2696
SRR3384922	fruit	no	1 week after full bloom	37.0409
SRR3384921	fruit	no	2 week after full bloom	33.6871
SRR3384920	fruit	no	3 week after full bloom	19.2333
SRR3384919	fruit	no	4 week after full bloom	28.43
SRR3384923	fruit	no	5 week after full bloom	18.9257
SRR3384918	fruit	no	6 week after full bloom	17.8912
SRR3384917	fruit	no	8 week after full bloom	16.7777
SRR3384916	fruit	no	10 week after full bloom	17.0915
SRR3384915	fruit	no	12 week after full bloom	22.8199
SRR3384914	fruit	no	14 week after full bloom	16.7339
SRR3384913	fruit	no	16 week after full bloom	16.8487
SRR3384912	fruit	no	18 week after full bloom	17.6016
SRR3384911	fruit	no	19 week after full bloom	14.7837
SRR3384910	fruit	no	20 week after full bloom	11.7993
SRR768128	whole fruit	no	25 days post anthesis	14.4211
SRR768129	whole fruit	no	35 days post anthesis	21.8639
SRR768130	whole fruit	no	60 days post anthesis	12.8794
SRR768131	whole fruit	no	87 days post anthesis	9.09788
SRR7343308	immature fruit flesh	no	immature	11.1401
SRR7343309	immature fruit flesh	no	immature	18.0137
SRR6320494	ripe fruit flesh	no	mature	16.1176
SRR5405143	ripe fruit peel	no	mature	7.73132
SRR6320572	ripe fruit peel	no	mature	3.46459
SRR7403504	fruit	uninfected	mature	10.6335
SRR7403506	fruit	uninfected	mature	11.4952
SRR7403507	fruit	uninfected	mature	10.4078
SRR7403500	fruit	infected with penicillium expansum	mature	11.6866
SRR7403501	fruit	infected with penicillium expansum	mature	12.5782
SRR7403508	fruit	infected with penicillium expansum	mature	13.0517
SRR7403502	fruit	infected with penicillium expansum	mature	14.7645
SRR7403503	fruit	infected with penicillium expansum	mature	14.8299
SRR7403505	fruit	infected with penicillium expansum	mature	13.0103
SRR1613973	Central seeds	no	20DAPF	42.4439
SRR1613974	Central seeds	no	20DAPF	39.4226
SRR1613975	Central seeds	no	20DAPF	41.8244
SRR1613976	Lateral seeds	no	20DAPF	36.6398
SRR1613977	Lateral seeds	no	20DAPF	40.318
SRR1613978	Lateral seeds	no	20DAPF	39.9811
SRR3744786	stem	no	mature	8.53933
SRR3744787	stem	no	mature	9.03555
SRR3744772	stem	no	mature	8.97022
SRX765691	seedling shoot apex	no	4-6 week old seedling	23.7675
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	22.7606
SRR1089478	leaf	Virus-free	plantlets	9.60385
SRR1089477	leaf	ASGV-infected	plantlets	9.71109
SRR767660	leaf	uninfected	fully developed	4.69323
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	39.6049
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.24478
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.73809
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.98504
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.41233
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.98069
SRR6308182	young leaf	no	immature leaves	45.9012
SRR3744769	leaf	no	mature	4.5656
SRR3744770	leaf	no	mature	3.74876
SRR3744771	leaf	no	mature	5.03715
SRR5405145	leaf	no	mature	8.57567
SRR6320561	leaf	no	mature	15.8872