Gene detail

Detail information of MD15G1202200 Annotation

Gene ID	Annotation
MD15G1202200	Ribosomal protein L31e family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0864	cytosolic large ribosomal subunit structural constituent of ribosome translation ribosome biogenesis nucleolus ubiquitin binding RNA methylation large subunit ribosomal protein L31e large subunit ribosomal protein L32e next to BRCA1 gene 1 protein large subunit ribosomal protein L44e large subunit ribosomal protein L22e large subunit ribosomal protein L14e protein polymerization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1202200	mRNA	Chr15	16100671	16102541	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G19740.1	1	Ribosomal protein L31e family protein
Prunus persica	Prupe.7G215000.3.p	1	Ribosomal protein L31e family protein
Prunus persica	Prupe.7G215000.4.p	1	Ribosomal protein L31e family protein
Prunus persica	Prupe.7G215000.2.p	1	Ribosomal protein L31e family protein
Prunus persica	Prupe.7G215000.1.p	1	Ribosomal protein L31e family protein
Pyrus communis	PCP043796.1	1	-
Pyrus communis	PCP034391.1	1	-
Pyrus x bretschneideri	Pbr015565.1	1	-
Rosa multiflora	Rmu_sc0039322.1_g000001.1	1	-
Solanum lycopersicum	Solyc12g008720.1.1	1	Ribosomal protein L31e family protein
Populus trichocarpa	Potri.018G070100.2	1	Ribosomal protein L31e family protein
Nicotiana benthamiana	Niben101Scf04028g02002.1	1	60S ribosomal protein L31
Nicotiana benthamiana	Niben101Scf03307g08008.1	1	60S ribosomal protein L31
Oryza sativa	LOC_Os02g48660.1	1	"60S ribosomal protein L31, putative, expressed"
Oryza sativa	LOC_Os06g21480.1	1	"60S ribosomal protein L31, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02910	large subunit ribosomal protein L31e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	413.261
SRR5252888	dormant buds	no	dormant buds(0 month)	313.823
SRR5252889	dormant buds	no	dormant buds(0 month)	222.645
SRR5252886	dormant buds	no	dormant buds(1 months)	234.708
SRR5252887	dormant buds	no	dormant buds(1 months)	228.138
SRR5252884	dormant buds	no	dormant buds(2 months)	227.878
SRR5252882	dormant buds	no	dormant buds(3 months)	287.443
SRR5252883	dormant buds	no	dormant buds(3 months)	220.237
SRR5252880	dormant buds	no	dormant buds(4 months)	368.356
SRR5252881	dormant buds	no	dormant buds(4 months)	356.409
SRR5252878	bud break	no	bud break	404.813
SRR5252879	bud break	no	bud break	885.063
SRR3744766	flower	no	mature	112.37
SRR3744767	flower	no	mature	115.747
SRR3744768	flower	no	mature	123.215
SRR6308190	stigmas	no	open flowers	105.762
SRR6308181	styles	no	open flowers	140.485
SRR6308188	filaments	no	open flowers	235.739
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	79.9532
SRR6308192	pollen	no	open flowers	96.0968
SRR6308191	petals	no	open flowers	222.113
SRR6308194	sepals	no	open flowers	156.486
SRR6308193	receptacles	no	open flowers	256.457
SRR6308189	ovaries	no	open flowers	190.242
SRR3384922	fruit	no	1 week after full bloom	578.061
SRR3384921	fruit	no	2 week after full bloom	535.649
SRR3384920	fruit	no	3 week after full bloom	500.771
SRR3384919	fruit	no	4 week after full bloom	412.829
SRR3384923	fruit	no	5 week after full bloom	305.863
SRR3384918	fruit	no	6 week after full bloom	333.77
SRR3384917	fruit	no	8 week after full bloom	396.89
SRR3384916	fruit	no	10 week after full bloom	314.643
SRR3384915	fruit	no	12 week after full bloom	367.744
SRR3384914	fruit	no	14 week after full bloom	338.268
SRR3384913	fruit	no	16 week after full bloom	330.847
SRR3384912	fruit	no	18 week after full bloom	251.583
SRR3384911	fruit	no	19 week after full bloom	241.631
SRR3384910	fruit	no	20 week after full bloom	180.318
SRR768128	whole fruit	no	25 days post anthesis	344.825
SRR768129	whole fruit	no	35 days post anthesis	262.645
SRR768130	whole fruit	no	60 days post anthesis	181.786
SRR768131	whole fruit	no	87 days post anthesis	122.32
SRR7343308	immature fruit flesh	no	immature	150.472
SRR7343309	immature fruit flesh	no	immature	190.47
SRR6320494	ripe fruit flesh	no	mature	105.284
SRR5405143	ripe fruit peel	no	mature	107.549
SRR6320572	ripe fruit peel	no	mature	232.905
SRR7403504	fruit	uninfected	mature	141.209
SRR7403506	fruit	uninfected	mature	132.451
SRR7403507	fruit	uninfected	mature	131.558
SRR7403500	fruit	infected with penicillium expansum	mature	147.058
SRR7403501	fruit	infected with penicillium expansum	mature	191.034
SRR7403508	fruit	infected with penicillium expansum	mature	155.647
SRR7403502	fruit	infected with penicillium expansum	mature	139.377
SRR7403503	fruit	infected with penicillium expansum	mature	115.206
SRR7403505	fruit	infected with penicillium expansum	mature	102.258
SRR1613973	Central seeds	no	20DAPF	392.469
SRR1613974	Central seeds	no	20DAPF	370.966
SRR1613975	Central seeds	no	20DAPF	430.903
SRR1613976	Lateral seeds	no	20DAPF	331.767
SRR1613977	Lateral seeds	no	20DAPF	425.483
SRR1613978	Lateral seeds	no	20DAPF	396.603
SRR3744786	stem	no	mature	140.544
SRR3744787	stem	no	mature	150.258
SRR3744772	stem	no	mature	140.559
SRX765691	seedling shoot apex	no	4-6 week old seedling	251.096
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	284.448
SRR1089478	leaf	Virus-free	plantlets	92.6097
SRR1089477	leaf	ASGV-infected	plantlets	98.5448
SRR767660	leaf	uninfected	fully developed	197.391
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	133.858
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	178.265
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	485.479
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	193.128
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	162.114
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	117.221
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	162.536
SRR6308182	young leaf	no	immature leaves	398.188
SRR3744769	leaf	no	mature	99.871
SRR3744770	leaf	no	mature	99.1768
SRR3744771	leaf	no	mature	103.46
SRR5405145	leaf	no	mature	66.1004
SRR6320561	leaf	no	mature	95.6977