Gene detail

Detail information of MD15G1229000 Annotation

Gene ID	Annotation
MD15G1229000	ribonuclease II family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1229000	mRNA	Chr15	18717524	18725934	-

Sequences

CDS:

MD15G1229000

GGAGTATGTAGAAGTAAGACCACTCGAAGCCGCCGCTCGTATCTCTCTCGCGGCAGTCCCATTCCAGTTCACTCGCCACTTCACCAGCAACCGAAAACGACGCCGTCGCACGTATCAGGGAGGCCGAAACATGTTGCAGAACAAGTCATTCGTCAAGAGAACCAGAGGCGGCAAAATCACCAAGGTCGTGAGAGAGCACTATCTCCGGCACGATATTTACTGTGGAGCTCCGGTTTGCAAAGTTTGCGATACGTCCGGAGCTCGATTGAGCCCTACCGCTTCCACCATTCTCATCTTCGACACCAATGTCGTCCTTCACCAGATTGATTTGATTGAGAATCCGGCAATAGACGATGTGGTTGTGCTTTCGATTGTGTTGGAAGAGGTTAAAAACAGGAACTTGTCTGTTTACAATAGAGTTAGAGCTCTGTGCAGCAATTCTTTGAGGAAATTTTTCGTCTTTTCGAACGAACACCACAAGGATACTTACGTTACAGACATGAGCGGAGAAAGCAAAAATGATCGAAATGATAGAGCAATTCGGGTAGCTGCTCAATGGTATCAAACTCATCTTGCTGGTTCAGCTAAGGTTTTACTTATAACCAATGATAAAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTCTGCAGAGACAGTTGAATCATATGTGAGGTCATTGAGTAGGCCAGAATTGCTCGACCTTCTCGTGCAGCCTGCATCCGAAGATGTAAAGATGGAGGACACTGAAGATTTGAGACCATCAAAAAGGAAAGTCATCTACTCAGAGCATAAGCCCATGTCTGAAATTACTTCTGGCTTGCATCGTGGCATATACCATCAAGGAAAACTTCGAGTTAATCGTTACAACCCCTTTGAAGCATATGTTGGAAGTGAGAGCATTGGTGATGAAATTATAATATATGGACGTACAAATATGAATAGGGCTTTTGATGGTGATATAGTGGCAGTTGAGCTTCTGCCGCAAGATCAATGGCATGAGGAGAAGTCTCTAGCTTTAGCAGATGAAGAGGATGAGGAAGAAGATGTTCATCTGGTTCCAGGCAGTGCTGATGATGCTCCTAGGACTATAGCTGCCCAAGGCTCTGCTGGAGTAACAGAACCTGTCCAAAATCGACCATCTGGCCGTGTTGTTGGTATTATAAAGCGGAATTGGCATTCTTATTGTGGATCTTTGGAGCCCATGGCTAAGCCTGCGGGTGGTGGTGGTATTGCCCATGCTTTATTTGTCTCAAAAGATCGAAGGATTCCAAAGATTCGAATTCAAACTCGACAGCTTGAGAATCTGATGGATAAGAGAATTATTGTGGCAGTTGATTCATGGGACCGTTTGTCTCGGTATCCTTCTGGCCATTATGTACGAACCATAGGAGTAATAGGTGATAAAGATACTGAAACTGAGGTGGTCTTGATTGAGAATGATATAAATACAAGACCATTTTCTTCTCAAGTTCTTGCATGCTTGCCACCGCTACCATGGTTTGTGTCTTCTGAAGATTTGGCAAATCCTATTAGACAGGATTTGCGACAATTGCGTGTCTTTAGTGTTGATCCTCCTGGATGCAAGGATATTGATGATGCATTGCACTGTACAGCTCTGCCAAATGGAAATTATGAAGTTGGAGTCCATATTGCTGATGTAACAAATTTTGTACACTCGGGAACTCCTCTTGATGATGAGGCTTCACAAAGAGGCACATCGGTCTACCTTGTTGAACGGCGCATTGACATGCTTCCAAAACCTCTGACGGAAGATATATGTTCTCTTCGAGCTGATGTGGAAAGGCTAGCTTTTTCTGTTATTTGGGAAATGACAGCTGAAGCTGAGATCATTTCTACAAGATACACCAAAAGTGTGATTAAATCATGTGCAGCATTATCTTACATTGAAGCTCAAGCGAGGATGGATGATAGTCGGTTGATGGATCCATTAACTACAGATTTAAGAAACATGAACTCTTTAGCAAAGATAATGAGGGCAAGGCGTATTGAGAGAGGAGCCTTAACTCTTGCATCTGCTGAAGTCAAATTTGAAATTGACACAGAGACTCATGATCCTCTTGATATCGGTATGTACCAGATTCGTGAAGCAAATCAAATGGTGGAGGAGTTTATGCTTGCCGCTAATGTTTCAGTTGCTGAGAAAATTCTTAAACATTTTCCTCTATGTTCACTATTGAGGCGGCATCCTTCTCCTACCAGAGAGATGCTTGAACCATTGTTGCGTACAGCTGCAGCTATTGGTCTGAACTTGGATGTCTCATCATCAAAGGCACTAGCTGATTCACTTGACTCTGCTGTGGGTAATGATCCGTACTTCAACAAGCTGATTCGGATTTTGGCTACAAGATGCATGACCCAGGCTGTTTACTTCTGTAGTGGGGATCTTAGCCCTCCAGAATATCTTCACTATGGGCTTGCAGCATCTCTATACACTCATTTCACCTCTCCTATTAGGAGATATGCAGATGTCATAACACACAGGTTGCTTGCTGCATCTTTGGGGATATACAAGCTTCCAACTATATTCCAAGATGGACCCAGACTCACAAGCATTGCTGACAATTTAAATTATCGGCATAGGAATGCCCAGATGGCAAGTCGGGCCTCAGTGGAGCTCCATACTGTCATTTTTTTCAAAAAGCGGCCGACAGACACAGAGGCAAGAATAGTCAGAATACGATCCAACGGATTTTTCGTATTTGTGCCCAAGTACGGCATAGAAGGGCCGGTGTACTTGACCCCAAGGGGTGAGAAGGGGGGCGGAGAATGGTATGTAGATGAGCAACAACAGAAGATTAGAAAAATGGACGGTAGTATTTCATACAGCGTTATGCAGACGGTGTTTATTCACATGGAGATTGTGGAACCCCAGCCCAACAGGCCAAAACTCCAACTATCGCTAGTGTAGACCAGCAACTTTGCCTCTCCCCAGTACCCTCCTTTAAGATGAGAAAAGTGTCTGGAATGGTGGCGTGAGCCAGGAGCTTGGTTCTAACCATCTTGGGCAGCGAAGATATGTCACGGGACACACATTGAAATATTGTATAGTTTCATTTAGTACAGTTTGTTTTACTGCGTGAACTTAAGGTGTGAGTAAGAGTTTTGGTAATCGGGTGTAGAGCTGAGAGGTTAGCAGCAGTCTGCGAGTTAAAGACGGGAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G17510.1	1	EMB2763\|EMBRYO DEFECTIVE 2763
Arabidopsis thaliana	AT2G17510.2	0.931	EMB2763\|EMBRYO DEFECTIVE 2763
Prunus persica	Prupe.7G185100.1.p	1	ribonuclease II family protein
Pyrus x bretschneideri	Pbr037342.1	1	-
Rosa multiflora	Rmu_sc0001651.1_g000008.1	1	-
Rubus occidentalis	Ro01_G01305	1	-
Fragaria vesca	mrna13026.1	1	ribonuclease II family protein
Vitis vinifera	GSVIVT01022300001	1	ribonuclease II family protein
Solanum lycopersicum	Solyc02g082460.2.1	1	ribonuclease II family protein
Populus trichocarpa	Potri.007G059100.1	1	ribonuclease II family protein
Nicotiana benthamiana	Niben101Scf00381g07023.1	1	Exosome complex exonuclease dis3
Oryza sativa	LOC_Os03g03710.1	1	"ribonuclease protein, putative, expressed"
Zea mays	GRMZM2G031859_P01	1	ribonuclease II family protein

Gene Ontology

GO term	Description	Category
GO:0004540	ribonuclease activity	molecular_function
GO:0003723	RNA binding	molecular_function

KEGG

KO	Description	Enzyme
K12585	exosome complex exonuclease DIS3/RRP44	EC:3.1.13.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13638.2	PIN_4	55	177	1.00E-15
PF00773.15	RNB	469	798	1.90E-99

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.9027
SRR5252888	dormant buds	no	dormant buds(0 month)	16.6195
SRR5252889	dormant buds	no	dormant buds(0 month)	14.9073
SRR5252886	dormant buds	no	dormant buds(1 months)	14.2639
SRR5252887	dormant buds	no	dormant buds(1 months)	10.8331
SRR5252884	dormant buds	no	dormant buds(2 months)	15.533
SRR5252882	dormant buds	no	dormant buds(3 months)	14.0209
SRR5252883	dormant buds	no	dormant buds(3 months)	12.5854
SRR5252880	dormant buds	no	dormant buds(4 months)	17.2633
SRR5252881	dormant buds	no	dormant buds(4 months)	15.8291
SRR5252878	bud break	no	bud break	18.3162
SRR5252879	bud break	no	bud break	18.8895
SRR3744766	flower	no	mature	3.78044
SRR3744767	flower	no	mature	4.46573
SRR3744768	flower	no	mature	4.42517
SRR6308190	stigmas	no	open flowers	4.00355
SRR6308181	styles	no	open flowers	3.85625
SRR6308188	filaments	no	open flowers	7.55331
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.32115
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.85057
SRR6308194	sepals	no	open flowers	4.46976
SRR6308193	receptacles	no	open flowers	6.35848
SRR6308189	ovaries	no	open flowers	5.31991
SRR3384922	fruit	no	1 week after full bloom	3.41947
SRR3384921	fruit	no	2 week after full bloom	4.05517
SRR3384920	fruit	no	3 week after full bloom	4.3375
SRR3384919	fruit	no	4 week after full bloom	4.07363
SRR3384923	fruit	no	5 week after full bloom	4.71616
SRR3384918	fruit	no	6 week after full bloom	4.89849
SRR3384917	fruit	no	8 week after full bloom	4.06057
SRR3384916	fruit	no	10 week after full bloom	6.26408
SRR3384915	fruit	no	12 week after full bloom	9.25799
SRR3384914	fruit	no	14 week after full bloom	6.33065
SRR3384913	fruit	no	16 week after full bloom	5.67403
SRR3384912	fruit	no	18 week after full bloom	6.35628
SRR3384911	fruit	no	19 week after full bloom	4.75949
SRR3384910	fruit	no	20 week after full bloom	5.29672
SRR768128	whole fruit	no	25 days post anthesis	9.46351
SRR768129	whole fruit	no	35 days post anthesis	3.4308
SRR768130	whole fruit	no	60 days post anthesis	5.30531
SRR768131	whole fruit	no	87 days post anthesis	8.44908
SRR7343308	immature fruit flesh	no	immature	8.01407
SRR7343309	immature fruit flesh	no	immature	6.95594
SRR6320494	ripe fruit flesh	no	mature	7.4238
SRR5405143	ripe fruit peel	no	mature	11.3974
SRR6320572	ripe fruit peel	no	mature	9.09595
SRR7403504	fruit	uninfected	mature	6.57219
SRR7403506	fruit	uninfected	mature	6.67667
SRR7403507	fruit	uninfected	mature	5.91049
SRR7403500	fruit	infected with penicillium expansum	mature	2.89126
SRR7403501	fruit	infected with penicillium expansum	mature	3.0034
SRR7403508	fruit	infected with penicillium expansum	mature	3.32501
SRR7403502	fruit	infected with penicillium expansum	mature	4.60338
SRR7403503	fruit	infected with penicillium expansum	mature	4.3737
SRR7403505	fruit	infected with penicillium expansum	mature	4.92179
SRR1613973	Central seeds	no	20DAPF	7.29905
SRR1613974	Central seeds	no	20DAPF	8.34218
SRR1613975	Central seeds	no	20DAPF	6.76597
SRR1613976	Lateral seeds	no	20DAPF	6.27442
SRR1613977	Lateral seeds	no	20DAPF	6.47457
SRR1613978	Lateral seeds	no	20DAPF	6.54456
SRR3744786	stem	no	mature	7.46933
SRR3744787	stem	no	mature	7.3174
SRR3744772	stem	no	mature	7.64811
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.4737
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.6504
SRR1089478	leaf	Virus-free	plantlets	6.59873
SRR1089477	leaf	ASGV-infected	plantlets	6.36057
SRR767660	leaf	uninfected	fully developed	2.95464
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.18574
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.58036
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0.618813
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.15651
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.41377
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.51105
SRR6308182	young leaf	no	immature leaves	9.47953
SRR3744769	leaf	no	mature	6.55886
SRR3744770	leaf	no	mature	6.10208
SRR3744771	leaf	no	mature	6.53138
SRR5405145	leaf	no	mature	8.8765
SRR6320561	leaf	no	mature	7.01678