Gene detail

Detail information of MD15G1252700 Annotation

Gene ID	Annotation
MD15G1252700	FAR1-related sequence 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1252700	mRNA	Chr15	21335101	21338110	-

Sequences

CDS:

MD15G1252700

GTTGTGTTCATCTCTATAGAGCATAGACAAATGTCTTGGAACAGCGAGTCGGTGACAGCACTCCTCAGTCCTCGGTCAGTCCCAAACTCCAACGTCCTCTTCTCTATTCCCGACGACCCGAATTCCCGTTCACAGCCGCGTAGCCTCGGCGCCGTATAAGGGAGTTATTTTGGGTAATGGATAACGATTGGCGAGGGAAAGTATTAGAGAAAAATGACAAGGAAGAAATATTTGAAGCGATTGATGAACTAAAAGTGGGGATGGAGGTGAGTAATGAAGCTGAAGCTTACAATCTATGCAACATATATGCCTTTAAGAAAGGTTTTAGTATCCGTAAAGGGAATATTCGAAGAGATTCCCACAATAATGTCCGGCAGCGTGACTTTTTTTGTTCAAAAGAAGGGTTTCAACCAGATGAAGATTTGTGTGAAGTGAAGAAGGTGAGAAGACTAGACACTAGAACAGGCTGTAAGGCTATGATTCGATTCACTGTGGACAATGGCGTGTGGAAGATCAGTCACCTCAACCCAGATCATAATCATGAGTTTGCTAGGCCTGAAGAAAGACAGTTTCTACGATCAGGTAGACATATACCAGGTGTGCGCGCAGCACTCATTAGCTCTATGGTTGATGGGAGTCCAAAACCAACACAATCGTATTCCCTCTTGGGAAAAGAATCTGGCAGCACTGAGAATGTTGGGTCCACTAATAAGGGTTGTCATAATTGTTTGCAAAGGAAGAATGAAGAAATGTTAGAAGGACGGGATGGACAAAGTTTATTAAACTATTTTAGGCATAAACAGGCGGAGGATCCAAACTTTTTTTACAGTGTTCAAGTGGACCAATTTAACCGGGCGACCAATTTTTTCTGGAGAGATAGTAGATCAAAGTTGGATTATGATTGCTTTGGAGATGCTGTATGCTTTGACACCACATTTCGAACCAGGAAATACAATCTCATTTGTGCTCCCTTTGTGGGAGTTAATCACCACTGCAAGAATGTCTTATTTGGTTGTGCTTTTATGTCGGATGTGAGTGCTGACTCAATTACTTGGTTGCTGGAAACATTTATGGTGTCAATGGGAAATAAACAACCGAAAACTATATTCACAGATGAGGATATTGCAATGGGAAATGCAATGGTAAGTATTCTTCCTGAGACACGCCATCGACTATGCATATGGCACATCTCTAAGAACGCTGCACAGTATCTTGGATCTCATAGTACTAATCCTGAGTTCAAGGAGCACTTTAACAAATGCTTTCATGATTGTCTCACTGAAGCTGAATTTGAAGCTACGTGGAATGACATGATTATTAAGTTCAACCTTGAAGGTAATGTGTGGCTGAAAAAGCTATATTCACTTCGGGAAAAATGGTGCCCTGCTTTTAGCTTAGATACTTACACAGCGAATATTAGATCCCCCCATAGAGGCGAGAGCATAACTGGTACTTTTCATCAAGTTTCTACAAAAACAATGGATCTCATTGGTCTTGTCCACCATTACGAGAAAAAAACAAGAGTGCTGCGCACAGCAGAGTTGGAGGAGGATTTTCGTTGTAAAAATGGTACGCCTCATCTTAGAGTAAATAGTGGTATCTTTAAGCATGCATCTGCTGAGTACACTGTCAAAATGTATTCATACTTTGAAAATGAGCTTATGAGTATCTTTGCTGTGAGGATGATAGAAGTTGGTAATGATGGCAACCAATATATTTACGAAGCAATCGAAGAAGGTAATCAAAGAGCCTACATGATTGACTACAACTCCACTACTGCCATGGTTTCGTGTTCTTGTAAGTTATTTGAATCCATGGGGATTTTGTGCCGGCATTCCCTAAAAGTTTTGGACTTAAAAAACTTCACTTGCTTACCACCCCAATACATAATGAAGAGATGGACTAAAGGGGCAAAGAAAAGGGTTGCAGTGAGTGGCGATTCATTTGAGTCGTCATACAAAATGGGGAAATCTTCCCAGTCGTCACGGCTAAGTTCATTGATGCATGAAGCAAATAATGTTTTCAGTGTAGCTGCATTATGTGATTCGGGAACAAGAATCGTCAGACGAAAGTTAGAGGAAGCGATCAAGTTACTTGAAAGTGATGAGGTAACCACTTCCATGGTGGGAAATTTGAGCAAAGTAGATGACTAATTTGTTCGTGATGTGCTTGATAAGTGAAGGTAGTTGGGCGAAACCGGAAAGAGAGAATGTGTAAGGTTTTGCTGTTTTGTGCCAAAGATTGCATTTGTGTAAGATGTTGGAAACTTGAGTTTTCTATTTTGTTCTTCTTTGGCAGAAGATGTAATATAGATTCTCTCTTTTAAGTAAGCATATCATTTGGTC

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	FAR1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G161500.1.p	1	FAR1-related sequence 5
Pyrus communis	PCP014534.1	1	-
Rosa multiflora	Rmu_sc0020744.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0000528.1_g000025.1	0.995	-
Rosa multiflora	Rmu_sc0001095.1_g000002.1	0.893	-
Fragaria vesca	mrna14932.1	1	FAR1-related sequence 5
Populus trichocarpa	Potri.016G058700.1	1	FAR1-related sequence 5
Populus trichocarpa	Potri.016G059200.1	0.629	FAR1-related sequence 3
Oryza sativa	LOC_Os02g34590.1	1	"transposon protein, putative, unclassified, expressed"
Oryza sativa	LOC_Os12g06380.1	1	"transposon protein, putative, unclassified, expressed"

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.11	FAR1	14	97	2.40E-18
PF10551.5	MULE	225	314	5.20E-22
PF04434.13	SWIM	509	532	0.00014

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.66473
SRR5252888	dormant buds	no	dormant buds(0 month)	4.36265
SRR5252889	dormant buds	no	dormant buds(0 month)	4.65279
SRR5252886	dormant buds	no	dormant buds(1 months)	3.60662
SRR5252887	dormant buds	no	dormant buds(1 months)	2.43076
SRR5252884	dormant buds	no	dormant buds(2 months)	2.68749
SRR5252882	dormant buds	no	dormant buds(3 months)	3.21951
SRR5252883	dormant buds	no	dormant buds(3 months)	2.44759
SRR5252880	dormant buds	no	dormant buds(4 months)	5.08118
SRR5252881	dormant buds	no	dormant buds(4 months)	4.06404
SRR5252878	bud break	no	bud break	4.54002
SRR5252879	bud break	no	bud break	4.5392
SRR3744766	flower	no	mature	0.653408
SRR3744767	flower	no	mature	0.489399
SRR3744768	flower	no	mature	0.857819
SRR6308190	stigmas	no	open flowers	0.896983
SRR6308181	styles	no	open flowers	0.772158
SRR6308188	filaments	no	open flowers	0.617449
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.159498
SRR6308192	pollen	no	open flowers	0.905362
SRR6308191	petals	no	open flowers	0.198119
SRR6308194	sepals	no	open flowers	0.319981
SRR6308193	receptacles	no	open flowers	1.32709
SRR6308189	ovaries	no	open flowers	1.70134
SRR3384922	fruit	no	1 week after full bloom	0.630806
SRR3384921	fruit	no	2 week after full bloom	0.872478
SRR3384920	fruit	no	3 week after full bloom	1.80367
SRR3384919	fruit	no	4 week after full bloom	1.14174
SRR3384923	fruit	no	5 week after full bloom	1.26186
SRR3384918	fruit	no	6 week after full bloom	1.07804
SRR3384917	fruit	no	8 week after full bloom	0.754621
SRR3384916	fruit	no	10 week after full bloom	1.10285
SRR3384915	fruit	no	12 week after full bloom	1.52237
SRR3384914	fruit	no	14 week after full bloom	1.51163
SRR3384913	fruit	no	16 week after full bloom	0.869523
SRR3384912	fruit	no	18 week after full bloom	1.32115
SRR3384911	fruit	no	19 week after full bloom	0.670836
SRR3384910	fruit	no	20 week after full bloom	1.10885
SRR768128	whole fruit	no	25 days post anthesis	1.98538
SRR768129	whole fruit	no	35 days post anthesis	1.39164
SRR768130	whole fruit	no	60 days post anthesis	1.86658
SRR768131	whole fruit	no	87 days post anthesis	1.58061
SRR7343308	immature fruit flesh	no	immature	2.89687
SRR7343309	immature fruit flesh	no	immature	1.85756
SRR6320494	ripe fruit flesh	no	mature	1.78785
SRR5405143	ripe fruit peel	no	mature	2.53612
SRR6320572	ripe fruit peel	no	mature	0.691895
SRR7403504	fruit	uninfected	mature	1.11029
SRR7403506	fruit	uninfected	mature	0.884786
SRR7403507	fruit	uninfected	mature	0.806224
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.074709
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.124918
SRR7403503	fruit	infected with penicillium expansum	mature	0.186031
SRR7403505	fruit	infected with penicillium expansum	mature	0.16722
SRR1613973	Central seeds	no	20DAPF	2.35898
SRR1613974	Central seeds	no	20DAPF	2.413
SRR1613975	Central seeds	no	20DAPF	1.9265
SRR1613976	Lateral seeds	no	20DAPF	1.75898
SRR1613977	Lateral seeds	no	20DAPF	1.69493
SRR1613978	Lateral seeds	no	20DAPF	2.09228
SRR3744786	stem	no	mature	0.960306
SRR3744787	stem	no	mature	0.918045
SRR3744772	stem	no	mature	0.978803
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.21959
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.05196
SRR1089478	leaf	Virus-free	plantlets	1.08052
SRR1089477	leaf	ASGV-infected	plantlets	1.88583
SRR767660	leaf	uninfected	fully developed	0.822312
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.54099
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.07182
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.311824
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.524176
SRR6308182	young leaf	no	immature leaves	1.88655
SRR3744769	leaf	no	mature	0.720593
SRR3744770	leaf	no	mature	0.894034
SRR3744771	leaf	no	mature	0.981081
SRR5405145	leaf	no	mature	0.480199
SRR6320561	leaf	no	mature	1.15284