Gene detail

Detail information of MD15G1276700 Annotation

Gene ID	Annotation
MD15G1276700	SKU5 similar 17

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1276700	mRNA	Chr15	24318160	24321223	-

Sequences

CDS:

MD15G1276700

CTTTTTCCCGCGCTGCTGCTATAAAAGGCTGTCACCAACCACTCCTCCACCCAATGCCACCCAAACAAAAAGAGAAACAAATAAATTGAATAAAACCCAACTCTGTGGTTTCTGGAAGAGCATTTTGCAGGGAGAGCAAAAATGGAGCAAAAAGCAGGCTTCTTGCTCCACTTGGTTTGTGGGGTTTTGGCAGTGCTTCTGAGTTCTTCTGTGGTGAAGGCAGAAGACCCATATAAGTTCTACACTTGGACTGTGACTTATGGGACTCTTTCTCCTCTTGGTGTTTCTCAACAGGTAATTCTCATCAATGGCCAGTTTCCTGGCCCTAGACTTGACGTTGTCACCAATGACAACATCATCCTCAACCTAATTAACAAGCTGGACCAACCTTTCCTCTTAACCTGGAATGGGATTAAACAGAGGAAAAACTCATGGCAAGATGGGGTTTTGGGAACCAATTGTCCCATCCCGCCGAACTCAAACTACACCTACAAGTTTCAGACCAAGGATCAGATAGGTTCCTTCACATATTTCCCATCAACTCAATTTCACAAAGCTGCTGGAGGGTTTGGAGGGATCAATGTCTATGCAAGACCTCGAATCCCAGTCCCTTATCCAACCCCTGATGGAGATTTCACTTTGCTTGCTGGCGACTGGTACAAGATCAGCCACAAGTCCTTACAGCAATCTTTGGATTCCGGAAAATCTCTTCCTTTTCCTACCGGTGTTCTTATAAATGGCCAAACTAGTAACACCTTCAGTGGTGACCAAGGAAAAACATATATGTTCAGGATCTCAAATGTCGGCTTGTCAGCCTCGTTGAACTTCCGGATTGAAGGTCACAAACTGAAGTTAGTTGAATGCGAAGGATCTCACACAATTCAGAACATGTATGACTCCCTTGACATACATGTTGGCCAATCAGTCTCTGTCCTAGTAACCTTAAATCAGGCTCCAAAGGACTACTACATTGTCGCATCCACACGATTCACTAGGCTTGTTCTTACGGCTACTTCAGTGCTACACTACACAAACTCGCACACCTCCGTTTCTGGACCTGTGCCGGCCGGTCCTACTGGCCAAATACACTGGTCTATGGAGCAAGCCAGAACTTTCAGGTGGAATCTGACAGCAAATGCAGCCAGGCCTAATCCTCAGGGCTCATTCCATTACGGCAAGGTCACACCGACAAAGACAATTGTGTTAGCCAATTCAGCGCCATTGATAAATGGAAAGCAGCGTTACGCATTCAACAGGGTCTCTTATGTTAACCCCGATACCCCTGTAAAGCTTGCTGATTACTTCAACATCCCTGGAGTCTTCAGCTTAAATTCCATCCAAACCACTCCCTCAGATGGCTCTGCATCCTTAGCTACCCCTGTTATGCCAGTCTCACACCACGACTTCATTGAAATTGTTTTCCAAAACAATGAAAACAGTGTCCAATCCATGCATTTAGATGGTTATGATTTCTGGGTTGTTGGTTATGGTTCCGGACCATGGACTCCAGCCAAGAGAACAACCTACAATCTCGTCGATACTCTTACTAGACATACTGCTCAGGTGTATCCAAACTCTTGGACAACTATTTTGGCGTCACTGGACAACCAAGGTATGTGGAACTTGAGGTCTGCTATATGGGAAAGGCAGTATCTTGGGCAACAGTTCTATCTCAGGGTTTGGAATCCAGTCCAAAACCTTGCTAATGAATACACCATTCCTTCAAATGCTCTGCTGTGTGGAAAAGCTGTAGGACGACACACATAAGGTGACCCTTGATTCTTCGGAGTCTGTTTTCTTGAGTCATGAAGGTTTGGCTAAAGGGAAGACAGACAGCAAAGAAAGCAAAAGAGAAGATTCATATTTGATGTTTCTTTTCCCTTAGTTGTATAACTCTAAATTTAGATGAATTTTCGTCTGCATTTTTACAAAAATTTATTGTATGCTACGGTTATATAATTTCTCTAGATATATAGAATTTAAGGTCTAAACTTTGCTTCTCTTTCTTCCTGTTTTTCATCATTTTGGTAA

Protein:

Gene family

Gene family	Subfamily
Transporter family	ILT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G66920.1	1	sks17\|SKU5 similar 17
Prunus persica	Prupe.7G140500.1.p	1	SKU5 similar 17
Pyrus communis	PCP005893.1	1	-
Pyrus x bretschneideri	Pbr001629.1	1	-
Pyrus x bretschneideri	Pbr042184.1	0.812	-
Rosa multiflora	Rmu_ssc0000257.1_g000032.1	1	-
Rubus occidentalis	Ro01_G23883	1	-
Fragaria vesca	mrna29389.1	1	SKU5 similar 17
Vitis vinifera	GSVIVT01005054001	1	SKU5 similar 17
Populus trichocarpa	Potri.007G038300.1	1	SKU5 similar 17
Nicotiana benthamiana	Niben101Scf02849g01009.1	1	Laccase-10
Oryza sativa	LOC_Os07g02810.1	1	"L-ascorbate oxidase homolog precursor, putative, expressed"
Zea mays	GRMZM2G043301_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005507	copper ion binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.11	Cu-oxidase_3	38	151	2.60E-38
PF00394.18	Cu-oxidase	164	298	5.60E-37
PF07731.10	Cu-oxidase_2	381	516	1.30E-28

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.90515
SRR5252888	dormant buds	no	dormant buds(0 month)	8.1623
SRR5252889	dormant buds	no	dormant buds(0 month)	11.6196
SRR5252886	dormant buds	no	dormant buds(1 months)	46.2201
SRR5252887	dormant buds	no	dormant buds(1 months)	64.4739
SRR5252884	dormant buds	no	dormant buds(2 months)	9.36839
SRR5252882	dormant buds	no	dormant buds(3 months)	15.6307
SRR5252883	dormant buds	no	dormant buds(3 months)	26.8403
SRR5252880	dormant buds	no	dormant buds(4 months)	13.2333
SRR5252881	dormant buds	no	dormant buds(4 months)	11.7702
SRR5252878	bud break	no	bud break	38.233
SRR5252879	bud break	no	bud break	48.8332
SRR3744766	flower	no	mature	0.512111
SRR3744767	flower	no	mature	0.559652
SRR3744768	flower	no	mature	0.545202
SRR6308190	stigmas	no	open flowers	1.18985
SRR6308181	styles	no	open flowers	2.28874
SRR6308188	filaments	no	open flowers	1.80718
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.373244
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.39108
SRR6308194	sepals	no	open flowers	1.2732
SRR6308193	receptacles	no	open flowers	3.16579
SRR6308189	ovaries	no	open flowers	1.11675
SRR3384922	fruit	no	1 week after full bloom	33.4987
SRR3384921	fruit	no	2 week after full bloom	20.3325
SRR3384920	fruit	no	3 week after full bloom	24.5237
SRR3384919	fruit	no	4 week after full bloom	20.7381
SRR3384923	fruit	no	5 week after full bloom	4.853
SRR3384918	fruit	no	6 week after full bloom	7.20318
SRR3384917	fruit	no	8 week after full bloom	2.21267
SRR3384916	fruit	no	10 week after full bloom	1.76059
SRR3384915	fruit	no	12 week after full bloom	1.06281
SRR3384914	fruit	no	14 week after full bloom	1.1957
SRR3384913	fruit	no	16 week after full bloom	0.485634
SRR3384912	fruit	no	18 week after full bloom	0.364594
SRR3384911	fruit	no	19 week after full bloom	0.262266
SRR3384910	fruit	no	20 week after full bloom	0.239572
SRR768128	whole fruit	no	25 days post anthesis	16.49
SRR768129	whole fruit	no	35 days post anthesis	23.3832
SRR768130	whole fruit	no	60 days post anthesis	2.64401
SRR768131	whole fruit	no	87 days post anthesis	2.3333
SRR7343308	immature fruit flesh	no	immature	15.2923
SRR7343309	immature fruit flesh	no	immature	22.2782
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.85522
SRR1613974	Central seeds	no	20DAPF	1.8148
SRR1613975	Central seeds	no	20DAPF	1.32935
SRR1613976	Lateral seeds	no	20DAPF	1.44652
SRR1613977	Lateral seeds	no	20DAPF	1.58059
SRR1613978	Lateral seeds	no	20DAPF	1.61674
SRR3744786	stem	no	mature	1.48651
SRR3744787	stem	no	mature	1.54473
SRR3744772	stem	no	mature	1.89339
SRX765691	seedling shoot apex	no	4-6 week old seedling	38.2757
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	35.5928
SRR1089478	leaf	Virus-free	plantlets	16.9356
SRR1089477	leaf	ASGV-infected	plantlets	11.0496
SRR767660	leaf	uninfected	fully developed	4.0949
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	13.4389
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.70193
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.15049
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.486696
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.78759
SRR6308182	young leaf	no	immature leaves	25.2366
SRR3744769	leaf	no	mature	0.404165
SRR3744770	leaf	no	mature	0.323565
SRR3744771	leaf	no	mature	0.776213
SRR5405145	leaf	no	mature	8.86744
SRR6320561	leaf	no	mature	7.68456