Gene detail

Detail information of MD15G1282600 Annotation

Gene ID	Annotation
MD15G1282600	Calcium-binding EF-hand family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1282600	mRNA	Chr15	25522723	25523322	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Populus trichocarpa	Potri.007G042900.1	1	Calcium-binding EF-hand family protein

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.2	EF-hand_7	60	117	4.80E-11
PF13499.2	EF-hand_7	132	191	8.50E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.09661
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.664655
SRR5252886	dormant buds	no	dormant buds(1 months)	0.485888
SRR5252887	dormant buds	no	dormant buds(1 months)	0.258202
SRR5252884	dormant buds	no	dormant buds(2 months)	0.824696
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.225324
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.455865
SRR3744766	flower	no	mature	0
SRR3744767	flower	no	mature	0.243593
SRR3744768	flower	no	mature	0.168496
SRR6308190	stigmas	no	open flowers	0.626995
SRR6308181	styles	no	open flowers	0.802672
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.2442
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.41349
SRR6308194	sepals	no	open flowers	2.00673
SRR6308193	receptacles	no	open flowers	0.799607
SRR6308189	ovaries	no	open flowers	1.94368
SRR3384922	fruit	no	1 week after full bloom	0.774766
SRR3384921	fruit	no	2 week after full bloom	1.25795
SRR3384920	fruit	no	3 week after full bloom	2.58452
SRR3384919	fruit	no	4 week after full bloom	4.60487
SRR3384923	fruit	no	5 week after full bloom	6.64989
SRR3384918	fruit	no	6 week after full bloom	11.736
SRR3384917	fruit	no	8 week after full bloom	7.55952
SRR3384916	fruit	no	10 week after full bloom	3.72499
SRR3384915	fruit	no	12 week after full bloom	1.20201
SRR3384914	fruit	no	14 week after full bloom	1.74867
SRR3384913	fruit	no	16 week after full bloom	1.83079
SRR3384912	fruit	no	18 week after full bloom	0.644288
SRR3384911	fruit	no	19 week after full bloom	2.47179
SRR3384910	fruit	no	20 week after full bloom	0.967672
SRR768128	whole fruit	no	25 days post anthesis	0.69134
SRR768129	whole fruit	no	35 days post anthesis	5.56742
SRR768130	whole fruit	no	60 days post anthesis	15.6986
SRR768131	whole fruit	no	87 days post anthesis	8.30346
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.225328
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	1.37826
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.884667
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.763946
SRR7403505	fruit	infected with penicillium expansum	mature	0.457797
SRR1613973	Central seeds	no	20DAPF	0.0566828
SRR1613974	Central seeds	no	20DAPF	0.0778849
SRR1613975	Central seeds	no	20DAPF	0.0528704
SRR1613976	Lateral seeds	no	20DAPF	0.333677
SRR1613977	Lateral seeds	no	20DAPF	0.290392
SRR1613978	Lateral seeds	no	20DAPF	0.197585
SRR3744786	stem	no	mature	0.28299
SRR3744787	stem	no	mature	0.187239
SRR3744772	stem	no	mature	0.0933673
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0724954
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.144012
SRR1089478	leaf	Virus-free	plantlets	4.74515
SRR1089477	leaf	ASGV-infected	plantlets	4.8133
SRR767660	leaf	uninfected	fully developed	4.43022
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.82531
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	14.3209
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.7375
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.64046
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.942323
SRR6308182	young leaf	no	immature leaves	0.223495
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.102706
SRR3744771	leaf	no	mature	0.204057
SRR5405145	leaf	no	mature	9.20538
SRR6320561	leaf	no	mature	16.9437