Gene detail

Detail information of MD15G1302900 Annotation

Gene ID	Annotation
MD15G1302900	Homeobox-leucine zipper protein family

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1302900	mRNA	Chr15	29349875	29351528	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	HB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G37790.1	1	HAT22\|Homeobox-leucine zipper protein family
Prunus persica	Prupe.6G213800.1.p	1	Homeobox-leucine zipper protein family
Pyrus x bretschneideri	Pbr024283.1	1	-
Pyrus x bretschneideri	Pbr024282.1	1	-
Rosa multiflora	Rmu_sc0009436.1_g000008.1	1	-
Rubus occidentalis	Ro01_G11169	1	-
Fragaria vesca	mrna05590.1	1	Homeobox-leucine zipper protein family
Vitis vinifera	GSVIVT01002447001	1	Homeobox-leucine zipper protein family
Populus trichocarpa	Potri.007G008200.1	1	Homeobox-leucine zipper protein family
Nicotiana benthamiana	Niben101Scf02990g09005.1	1	Homeobox-leucine zipper protein family LENGTH=278
Oryza sativa	LOC_Os03g12860.1	1	"homeobox associated leucine zipper, putative, expressed"
Oryza sativa	LOC_Os10g01470.1	1	"homeobox associated leucine zipper, putative, expressed"
Oryza sativa	LOC_Os06g04870.1	1	"homeobox associated leucine zipper, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.25	Homeobox	144	198	2.20E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.92336
SRR5252888	dormant buds	no	dormant buds(0 month)	3.54038
SRR5252889	dormant buds	no	dormant buds(0 month)	2.57339
SRR5252886	dormant buds	no	dormant buds(1 months)	1.76367
SRR5252887	dormant buds	no	dormant buds(1 months)	2.43676
SRR5252884	dormant buds	no	dormant buds(2 months)	3.14314
SRR5252882	dormant buds	no	dormant buds(3 months)	2.40183
SRR5252883	dormant buds	no	dormant buds(3 months)	3.43507
SRR5252880	dormant buds	no	dormant buds(4 months)	7.19112
SRR5252881	dormant buds	no	dormant buds(4 months)	5.15494
SRR5252878	bud break	no	bud break	4.32739
SRR5252879	bud break	no	bud break	4.05399
SRR3744766	flower	no	mature	5.21875
SRR3744767	flower	no	mature	5.15592
SRR3744768	flower	no	mature	4.58656
SRR6308190	stigmas	no	open flowers	49.0515
SRR6308181	styles	no	open flowers	23.0046
SRR6308188	filaments	no	open flowers	0.306294
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.630867
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.392165
SRR6308194	sepals	no	open flowers	2.0273
SRR6308193	receptacles	no	open flowers	1.11143
SRR6308189	ovaries	no	open flowers	8.29004
SRR3384922	fruit	no	1 week after full bloom	2.60007
SRR3384921	fruit	no	2 week after full bloom	3.04261
SRR3384920	fruit	no	3 week after full bloom	1.87535
SRR3384919	fruit	no	4 week after full bloom	1.79442
SRR3384923	fruit	no	5 week after full bloom	2.47145
SRR3384918	fruit	no	6 week after full bloom	5.96101
SRR3384917	fruit	no	8 week after full bloom	6.14726
SRR3384916	fruit	no	10 week after full bloom	5.34434
SRR3384915	fruit	no	12 week after full bloom	3.77949
SRR3384914	fruit	no	14 week after full bloom	5.21638
SRR3384913	fruit	no	16 week after full bloom	2.7399
SRR3384912	fruit	no	18 week after full bloom	3.03876
SRR3384911	fruit	no	19 week after full bloom	4.11023
SRR3384910	fruit	no	20 week after full bloom	2.10645
SRR768128	whole fruit	no	25 days post anthesis	3.20941
SRR768129	whole fruit	no	35 days post anthesis	0.834727
SRR768130	whole fruit	no	60 days post anthesis	1.555
SRR768131	whole fruit	no	87 days post anthesis	1.28751
SRR7343308	immature fruit flesh	no	immature	2.49231
SRR7343309	immature fruit flesh	no	immature	0.829348
SRR6320494	ripe fruit flesh	no	mature	3.16757
SRR5405143	ripe fruit peel	no	mature	8.36401
SRR6320572	ripe fruit peel	no	mature	3.76155
SRR7403504	fruit	uninfected	mature	2.5725
SRR7403506	fruit	uninfected	mature	2.34691
SRR7403507	fruit	uninfected	mature	2.05325
SRR7403500	fruit	infected with penicillium expansum	mature	0.201478
SRR7403501	fruit	infected with penicillium expansum	mature	0.298989
SRR7403508	fruit	infected with penicillium expansum	mature	0.215538
SRR7403502	fruit	infected with penicillium expansum	mature	0.333285
SRR7403503	fruit	infected with penicillium expansum	mature	0.372253
SRR7403505	fruit	infected with penicillium expansum	mature	0.167305
SRR1613973	Central seeds	no	20DAPF	3.43083
SRR1613974	Central seeds	no	20DAPF	3.50685
SRR1613975	Central seeds	no	20DAPF	2.94642
SRR1613976	Lateral seeds	no	20DAPF	3.35581
SRR1613977	Lateral seeds	no	20DAPF	4.03689
SRR1613978	Lateral seeds	no	20DAPF	3.84664
SRR3744786	stem	no	mature	10.0236
SRR3744787	stem	no	mature	10.4682
SRR3744772	stem	no	mature	11.5328
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.4903
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.59295
SRR1089478	leaf	Virus-free	plantlets	9.16241
SRR1089477	leaf	ASGV-infected	plantlets	13.0647
SRR767660	leaf	uninfected	fully developed	3.68884
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.92522
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.53026
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	20.4843
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.2587
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.48101
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.88524
SRR6308182	young leaf	no	immature leaves	2.29067
SRR3744769	leaf	no	mature	16.7425
SRR3744770	leaf	no	mature	14.6545
SRR3744771	leaf	no	mature	14.3431
SRR5405145	leaf	no	mature	16.096
SRR6320561	leaf	no	mature	11.9818