Gene detail

Detail information of MD15G1331200 Annotation

Gene ID	Annotation
MD15G1331200	chloroplast-localized ISCA-like protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1331200	mRNA	Chr15	36539663	36544152	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G10500.1	1	ATCPISCA;CPISCA\|chloroplast-localized ISCA-like protein
Prunus persica	Prupe.6G169400.1.p	1	chloroplast-localized ISCA-like protein
Pyrus communis	PCP034170.1	1	-
Pyrus x bretschneideri	Pbr026905.1	1	-
Rosa multiflora	Rmu_sc0006619.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0001803.1_g000035.1	0.799	-
Rubus occidentalis	Ro01_G11668	1	-
Fragaria vesca	mrna21146.1	1	chloroplast-localized ISCA-like protein
Vitis vinifera	GSVIVT01022247001	1	chloroplast-localized ISCA-like protein
Populus trichocarpa	Potri.007G079600.2	1	chloroplast-localized ISCA-like protein
Nicotiana benthamiana	Niben101Scf11122g01018.1	1	Iron-sulfur cluster insertion protein ErpA 2
Oryza sativa	LOC_Os06g05400.1	1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"
Zea mays	GRMZM2G050971_P01	1	Iron-sulfur assembly protein IscA

Gene Ontology

GO term	Description	Category
GO:0051536	iron-sulfur cluster binding	molecular_function
GO:0005198	structural molecule activity	molecular_function
GO:0016226	iron-sulfur cluster assembly	biological_process

KEGG

KO	Description	Enzyme
K22063	iron-sulfur cluster assembly 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	58.8056
SRR5252888	dormant buds	no	dormant buds(0 month)	29.2607
SRR5252889	dormant buds	no	dormant buds(0 month)	23.979
SRR5252886	dormant buds	no	dormant buds(1 months)	24.7799
SRR5252887	dormant buds	no	dormant buds(1 months)	22.3858
SRR5252884	dormant buds	no	dormant buds(2 months)	30.3759
SRR5252882	dormant buds	no	dormant buds(3 months)	39.3707
SRR5252883	dormant buds	no	dormant buds(3 months)	42.6457
SRR5252880	dormant buds	no	dormant buds(4 months)	31.5741
SRR5252881	dormant buds	no	dormant buds(4 months)	19.47
SRR5252878	bud break	no	bud break	27.7215
SRR5252879	bud break	no	bud break	18.3407
SRR3744766	flower	no	mature	39.1282
SRR3744767	flower	no	mature	38.1159
SRR3744768	flower	no	mature	40.0854
SRR6308190	stigmas	no	open flowers	65.7222
SRR6308181	styles	no	open flowers	50.3935
SRR6308188	filaments	no	open flowers	47.271
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	48.5052
SRR6308192	pollen	no	open flowers	61.1559
SRR6308191	petals	no	open flowers	37.2241
SRR6308194	sepals	no	open flowers	79.2024
SRR6308193	receptacles	no	open flowers	49.7701
SRR6308189	ovaries	no	open flowers	46.9613
SRR3384922	fruit	no	1 week after full bloom	57.494
SRR3384921	fruit	no	2 week after full bloom	52.6136
SRR3384920	fruit	no	3 week after full bloom	67.9744
SRR3384919	fruit	no	4 week after full bloom	53.2336
SRR3384923	fruit	no	5 week after full bloom	66.0602
SRR3384918	fruit	no	6 week after full bloom	62.0834
SRR3384917	fruit	no	8 week after full bloom	62.7575
SRR3384916	fruit	no	10 week after full bloom	56.8772
SRR3384915	fruit	no	12 week after full bloom	66.956
SRR3384914	fruit	no	14 week after full bloom	63.0667
SRR3384913	fruit	no	16 week after full bloom	62.2258
SRR3384912	fruit	no	18 week after full bloom	62.2887
SRR3384911	fruit	no	19 week after full bloom	56.475
SRR3384910	fruit	no	20 week after full bloom	46.5937
SRR768128	whole fruit	no	25 days post anthesis	53.366
SRR768129	whole fruit	no	35 days post anthesis	49.5101
SRR768130	whole fruit	no	60 days post anthesis	28.3148
SRR768131	whole fruit	no	87 days post anthesis	21.4949
SRR7343308	immature fruit flesh	no	immature	46.1072
SRR7343309	immature fruit flesh	no	immature	51.9106
SRR6320494	ripe fruit flesh	no	mature	64.4803
SRR5405143	ripe fruit peel	no	mature	85.3727
SRR6320572	ripe fruit peel	no	mature	69.9089
SRR7403504	fruit	uninfected	mature	82.6958
SRR7403506	fruit	uninfected	mature	85.3037
SRR7403507	fruit	uninfected	mature	82.3977
SRR7403500	fruit	infected with penicillium expansum	mature	15.5356
SRR7403501	fruit	infected with penicillium expansum	mature	20.2599
SRR7403508	fruit	infected with penicillium expansum	mature	18.97
SRR7403502	fruit	infected with penicillium expansum	mature	10.9026
SRR7403503	fruit	infected with penicillium expansum	mature	10.2927
SRR7403505	fruit	infected with penicillium expansum	mature	10.2944
SRR1613973	Central seeds	no	20DAPF	46.2578
SRR1613974	Central seeds	no	20DAPF	49.7012
SRR1613975	Central seeds	no	20DAPF	47.4188
SRR1613976	Lateral seeds	no	20DAPF	51.2489
SRR1613977	Lateral seeds	no	20DAPF	55.9175
SRR1613978	Lateral seeds	no	20DAPF	53.1351
SRR3744786	stem	no	mature	31.4398
SRR3744787	stem	no	mature	35.9518
SRR3744772	stem	no	mature	32.5914
SRX765691	seedling shoot apex	no	4-6 week old seedling	26.5779
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	33.43
SRR1089478	leaf	Virus-free	plantlets	61.9273
SRR1089477	leaf	ASGV-infected	plantlets	64.5894
SRR767660	leaf	uninfected	fully developed	86.4816
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	57.9433
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	65.2751
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	98.6123
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	68.8295
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	38.7789
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	48.6658
SRR6308182	young leaf	no	immature leaves	33.9393
SRR3744769	leaf	no	mature	37.0464
SRR3744770	leaf	no	mature	34.9285
SRR3744771	leaf	no	mature	38.1533
SRR5405145	leaf	no	mature	80.0914
SRR6320561	leaf	no	mature	85.5157