Gene detail

Detail information of MD15G1347700 Annotation

Gene ID	Annotation
MD15G1347700	TRAM

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0025	ribonuclease T2 activity stamen filament development potassium:sodium symporter activity potassium ion transmembrane transport extracellular region

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1347700	mRNA	Chr15	41174250	41176761	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G21790.1	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Prunus persica	Prupe.1G495500.1.p	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Pyrus communis	PCP012506.1	1	-
Rosa multiflora	Rmu_ssc0000277.1_g000001.1	1	-
Rubus occidentalis	Ro02_G01448	1	-
Fragaria vesca	mrna11182.1	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Vitis vinifera	GSVIVT01008863001	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Solanum lycopersicum	Solyc01g079770.2.1	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Populus trichocarpa	Potri.002G083300.1	1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein"
Nicotiana benthamiana	Niben101Scf11004g00001.1	1	TLC domain-containing protein 2
Oryza sativa	LOC_Os01g64930.1	1	expressed protein
Zea mays	GRMZM2G077279_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03798.12	TRAM_LAG1_CLN8	68	247	1.80E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.6895
SRR5252888	dormant buds	no	dormant buds(0 month)	16.9192
SRR5252889	dormant buds	no	dormant buds(0 month)	20.7807
SRR5252886	dormant buds	no	dormant buds(1 months)	10.8757
SRR5252887	dormant buds	no	dormant buds(1 months)	12.3844
SRR5252884	dormant buds	no	dormant buds(2 months)	15.2363
SRR5252882	dormant buds	no	dormant buds(3 months)	18.6606
SRR5252883	dormant buds	no	dormant buds(3 months)	18.0124
SRR5252880	dormant buds	no	dormant buds(4 months)	15.544
SRR5252881	dormant buds	no	dormant buds(4 months)	18.6367
SRR5252878	bud break	no	bud break	9.63991
SRR5252879	bud break	no	bud break	5.42579
SRR3744766	flower	no	mature	15.7796
SRR3744767	flower	no	mature	15.6715
SRR3744768	flower	no	mature	15.5053
SRR6308190	stigmas	no	open flowers	0.928238
SRR6308181	styles	no	open flowers	2.69168
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.772323
SRR6308192	pollen	no	open flowers	1.76129
SRR6308191	petals	no	open flowers	1.7923
SRR6308194	sepals	no	open flowers	5.21168
SRR6308193	receptacles	no	open flowers	4.74969
SRR6308189	ovaries	no	open flowers	3.37623
SRR3384922	fruit	no	1 week after full bloom	13.6878
SRR3384921	fruit	no	2 week after full bloom	10.0512
SRR3384920	fruit	no	3 week after full bloom	11.9315
SRR3384919	fruit	no	4 week after full bloom	13.9906
SRR3384923	fruit	no	5 week after full bloom	19.9286
SRR3384918	fruit	no	6 week after full bloom	11.4129
SRR3384917	fruit	no	8 week after full bloom	12.2192
SRR3384916	fruit	no	10 week after full bloom	14.4908
SRR3384915	fruit	no	12 week after full bloom	21.983
SRR3384914	fruit	no	14 week after full bloom	13.3166
SRR3384913	fruit	no	16 week after full bloom	20.9671
SRR3384912	fruit	no	18 week after full bloom	17.9987
SRR3384911	fruit	no	19 week after full bloom	27.0647
SRR3384910	fruit	no	20 week after full bloom	16.8382
SRR768128	whole fruit	no	25 days post anthesis	14.2207
SRR768129	whole fruit	no	35 days post anthesis	11.9847
SRR768130	whole fruit	no	60 days post anthesis	13.5479
SRR768131	whole fruit	no	87 days post anthesis	12.1455
SRR7343308	immature fruit flesh	no	immature	22.3611
SRR7343309	immature fruit flesh	no	immature	35.3093
SRR6320494	ripe fruit flesh	no	mature	17.4445
SRR5405143	ripe fruit peel	no	mature	18.6437
SRR6320572	ripe fruit peel	no	mature	16.4107
SRR7403504	fruit	uninfected	mature	23.656
SRR7403506	fruit	uninfected	mature	25.2712
SRR7403507	fruit	uninfected	mature	24.4541
SRR7403500	fruit	infected with penicillium expansum	mature	6.31124
SRR7403501	fruit	infected with penicillium expansum	mature	9.65841
SRR7403508	fruit	infected with penicillium expansum	mature	8.12312
SRR7403502	fruit	infected with penicillium expansum	mature	10.7663
SRR7403503	fruit	infected with penicillium expansum	mature	12.1162
SRR7403505	fruit	infected with penicillium expansum	mature	10.2359
SRR1613973	Central seeds	no	20DAPF	7.04537
SRR1613974	Central seeds	no	20DAPF	6.52882
SRR1613975	Central seeds	no	20DAPF	7.27833
SRR1613976	Lateral seeds	no	20DAPF	6.63105
SRR1613977	Lateral seeds	no	20DAPF	7.26314
SRR1613978	Lateral seeds	no	20DAPF	6.90715
SRR3744786	stem	no	mature	22.1258
SRR3744787	stem	no	mature	19.4716
SRR3744772	stem	no	mature	19.766
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.4335
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.38539
SRR1089478	leaf	Virus-free	plantlets	11.7404
SRR1089477	leaf	ASGV-infected	plantlets	10.2324
SRR767660	leaf	uninfected	fully developed	23.2744
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	26.0144
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	19.0036
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	36.2907
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	18.3873
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	22.0667
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.06427
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.0869
SRR6308182	young leaf	no	immature leaves	8.14265
SRR3744769	leaf	no	mature	18.5897
SRR3744770	leaf	no	mature	20.3004
SRR3744771	leaf	no	mature	20.9574
SRR5405145	leaf	no	mature	10.8178
SRR6320561	leaf	no	mature	17.2536