Gene detail

Detail information of MD15G1352300 Annotation

Gene ID	Annotation
MD15G1352300	Peptidase M20/M25/M40 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1352300	mRNA	Chr15	42084953	42088018	+

Sequences

CDS:

MD15G1352300

GTAGGAAAATAACAGAAAAAAAGAAAATTGTAATTGAACCTAATAATCTGTTCTAAAAAAGAAAAAAAAATTGTAATTGGACCGTAGACATAGCCCAAACCGAATTGAAGTGTGGCAGCGAGCTGAGAGTGAGAGTTGACTGAACTGCAAGTACAAACTGTTACAGCCGCCACATCCGCCTCCATGTCCAACCCTCTCCTCCTCACACTCCTCCTTCACCTACTCGCCGCAACCGGGGCCCTCTCCGACCGCCAAAACGACACCCCCGTCGGCCGCTTCCAAAACTACCTCCGAATCAACACCGCCCACCCCAACCCAAACTACGCCGCCCCGGTCGCCTTCCTCACCGCCATCGCCCAAACCCTAAACCTCCAAATCCAGACCCTCCATTTCACCCCGTCCAAATCCAAGCCCCTCCTCCTCCTCACCTGGCCCGGGTCCCACCCCTCTCTCCCCTCCCTCCTCCTTAACTCCCACCTAGACTCCGTCCCCGCCGAGCCCGACAAGTGGACCCACCCTCCCTTCTCCGCCCACCGCACCCCGGAGGGCCTCATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAACCTCAAGGCCGCCAATTTCACCCCTATCCGCACAGTCCACGTGTCCCTCGTCCCCGACGAGGAGATCGGCGGCCTTGACGGCGCCGCTAAGTTCGCCGCCTCCAAGCAATTTCACGATTTGAATGTGGGGTTTATGTTGGACGAAGGCCAGGCTAATCCCGGCGACGAGTTTAGGGTTTTCTACGCCGATCGGACGCCGTGGAATTTGATCGTGAAGGCGCAGGGGACGCCGGGACACGGTTCGAGATTGTACGATAACGGAGCGATGGAGAATTTGATGAAGAGCGTGGAGGTTATGACTCGGTTCAGGGAGGTCCAATTCGACGAGGTTAAAGCCGGCAATGCGGCGATTTCGGAGGTTATTTCGGTCAATCCTGTTTATTTGAAGTCTGGGATTCCTTCCGGCGATGGGTTTGTGATGAATATGCAACCTTCGGAGGCGGAAGCAGGGTTTAATATACGAATCCCGCCTACTGCAGACCCGGAGCTTCTTAGGAAGAGGATTGCCGTGGAATGGGCGCCGGCGTCATGGAATTTGACTTACCAACTACTTGAGCAAGGACCAACTAGAGATTTTATGGGCCGCCCTTTAGCAACAGCAACCAATGATTCCAATCCATGGTGGTCTGTTTTCAAACAAGCTATCGAATCAGCTGGAGGGAAACTTGCGAAGCCTGAAATTTTGACATCAACTACCGATGCACGATACATGAGGCAGCAGGGCATTCCTACGCTTGGTTTCTCCCCAATGACGAATACTCCTATCTTACTTCATGACCATAATGAGCACCTAAAGGATACCGTATTCTTGAAAGGCATAAAAGTATACGAATCTCTAATCAGCGCTTTGAGTTCCTTTGAGCAAAGATCTCAATAGCCACTCTCAGTATCAAATGGAAAGGACAATTATCATATGCTAGACTTGACATGGTGGCAGTGCTGCACCATGCCGGGCGTTTTGCACTTGGGGGGATGCGAAGGTGGATTTATACTTTGGGCCGTCTGAAAGGTTAAGTGATGATTTAACAGATTTACAAACTTTATAGTAAGCTTTATAAATTGCGGACGCCGAATAAAAGTCCAGGAGCTCCCATTTTAGTTGGCACTGGACCTTCTTTGCATGTGTATTGCTGTAATGACATTCTTGTACGTTCCTTGGAATATTGTATATAATAGAATTAGAGTTCACAAATTAATAGATGGCACTTATCACCTTAAAATGGAACACATATGCTTAGTTCTACGAACAAATCTGGACATTGGTTGATTGATTTGTATTGAATCATCCGACGATTGTTGATCCGTAAAATGTTTGATCGTTATTGTAATGTGTTAATTGACTCTGTAATCTGTTAATGACAGTGTTCTCT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G44820.1	1	Peptidase M20/M25/M40 family protein
Prunus persica	Prupe.1G500800.1.p	1	Peptidase M20/M25/M40 family protein
Pyrus communis	PCP002668.1	1	-
Pyrus x bretschneideri	Pbr037021.1	1	-
Rosa multiflora	Rmu_sc0012290.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0005712.1_g000028.1	0.865	-
Rubus occidentalis	Ro02_G01425	1	-
Fragaria vesca	mrna11146.1	1	Peptidase M20/M25/M40 family protein
Populus trichocarpa	Potri.002G085400.1	1	Peptidase M20/M25/M40 family protein
Populus trichocarpa	Potri.002G085500.1	0.752	Peptidase M20/M25/M40 family protein
Oryza sativa	LOC_Os06g10770.1	1	"peptidase, putative, expressed"
Zea mays	GRMZM2G135970_P01	1	Aminoacylase-1;

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	cellular component
GO:0006520	cellular amino acid metabolic process	biological_process
GO:0008237	metallopeptidase activity	molecular_function
GO:0006508	proteolysis	biological_process
GO:0004046	aminoacylase activity	molecular_function

KEGG

KO	Description	Enzyme
K14677	aminoacylase	EC:3.5.1.14

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.79782
SRR5252888	dormant buds	no	dormant buds(0 month)	3.24608
SRR5252889	dormant buds	no	dormant buds(0 month)	2.36231
SRR5252886	dormant buds	no	dormant buds(1 months)	3.27765
SRR5252887	dormant buds	no	dormant buds(1 months)	2.3036
SRR5252884	dormant buds	no	dormant buds(2 months)	2.51239
SRR5252882	dormant buds	no	dormant buds(3 months)	4.49963
SRR5252883	dormant buds	no	dormant buds(3 months)	2.8438
SRR5252880	dormant buds	no	dormant buds(4 months)	2.78421
SRR5252881	dormant buds	no	dormant buds(4 months)	2.99067
SRR5252878	bud break	no	bud break	2.59424
SRR5252879	bud break	no	bud break	1.63676
SRR3744766	flower	no	mature	8.85055
SRR3744767	flower	no	mature	9.0336
SRR3744768	flower	no	mature	8.07437
SRR6308190	stigmas	no	open flowers	8.3893
SRR6308181	styles	no	open flowers	8.26781
SRR6308188	filaments	no	open flowers	7.40589
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.43383
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	5.06695
SRR6308194	sepals	no	open flowers	4.98712
SRR6308193	receptacles	no	open flowers	7.28181
SRR6308189	ovaries	no	open flowers	10.3956
SRR3384922	fruit	no	1 week after full bloom	6.52908
SRR3384921	fruit	no	2 week after full bloom	7.47768
SRR3384920	fruit	no	3 week after full bloom	6.34334
SRR3384919	fruit	no	4 week after full bloom	8.97592
SRR3384923	fruit	no	5 week after full bloom	10.1938
SRR3384918	fruit	no	6 week after full bloom	11.7798
SRR3384917	fruit	no	8 week after full bloom	12.0183
SRR3384916	fruit	no	10 week after full bloom	10.789
SRR3384915	fruit	no	12 week after full bloom	9.2364
SRR3384914	fruit	no	14 week after full bloom	10.0566
SRR3384913	fruit	no	16 week after full bloom	10.1031
SRR3384912	fruit	no	18 week after full bloom	9.57464
SRR3384911	fruit	no	19 week after full bloom	8.46647
SRR3384910	fruit	no	20 week after full bloom	8.45286
SRR768128	whole fruit	no	25 days post anthesis	4.00881
SRR768129	whole fruit	no	35 days post anthesis	7.02133
SRR768130	whole fruit	no	60 days post anthesis	10.5574
SRR768131	whole fruit	no	87 days post anthesis	6.75111
SRR7343308	immature fruit flesh	no	immature	5.97046
SRR7343309	immature fruit flesh	no	immature	10.4236
SRR6320494	ripe fruit flesh	no	mature	7.15453
SRR5405143	ripe fruit peel	no	mature	12.2059
SRR6320572	ripe fruit peel	no	mature	13.6828
SRR7403504	fruit	uninfected	mature	8.51875
SRR7403506	fruit	uninfected	mature	7.58966
SRR7403507	fruit	uninfected	mature	8.27761
SRR7403500	fruit	infected with penicillium expansum	mature	4.5365
SRR7403501	fruit	infected with penicillium expansum	mature	3.68019
SRR7403508	fruit	infected with penicillium expansum	mature	4.65897
SRR7403502	fruit	infected with penicillium expansum	mature	5.45312
SRR7403503	fruit	infected with penicillium expansum	mature	5.75543
SRR7403505	fruit	infected with penicillium expansum	mature	6.98163
SRR1613973	Central seeds	no	20DAPF	10.6003
SRR1613974	Central seeds	no	20DAPF	9.60931
SRR1613975	Central seeds	no	20DAPF	10.909
SRR1613976	Lateral seeds	no	20DAPF	9.37501
SRR1613977	Lateral seeds	no	20DAPF	9.66739
SRR1613978	Lateral seeds	no	20DAPF	8.89754
SRR3744786	stem	no	mature	12.0572
SRR3744787	stem	no	mature	13.3379
SRR3744772	stem	no	mature	12.7131
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.37522
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.43595
SRR1089478	leaf	Virus-free	plantlets	6.40618
SRR1089477	leaf	ASGV-infected	plantlets	6.60465
SRR767660	leaf	uninfected	fully developed	6.41719
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	15.3252
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.57006
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.06272
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	11.3476
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.67978
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.0859
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.2794
SRR6308182	young leaf	no	immature leaves	5.44817
SRR3744769	leaf	no	mature	10.3978
SRR3744770	leaf	no	mature	10.6162
SRR3744771	leaf	no	mature	11.2448
SRR5405145	leaf	no	mature	15.1451
SRR6320561	leaf	no	mature	7.44766