Gene detail

Detail information of MD15G1369300 Annotation

Gene ID	Annotation
MD15G1369300	Trm112p-like protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1369300	mRNA	Chr15	44871049	44872058	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP010861.1	1	-
Pyrus x bretschneideri	Pbr010104.1	1	-
Pyrus x bretschneideri	Pbr010093.1	1	-
Pyrus x bretschneideri	Pbr001640.1	0.625	-
Oryza sativa	LOC_Os07g43020.1	1	"TRM112, putative, expressed"
Zea mays	GRMZM2G419969_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K15448	multifunctional methyltransferase subunit TRM112	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03966.12	Trm112p	1	104	6.60E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.56091
SRR5252888	dormant buds	no	dormant buds(0 month)	1.11288
SRR5252889	dormant buds	no	dormant buds(0 month)	2.79328
SRR5252886	dormant buds	no	dormant buds(1 months)	2.35615
SRR5252887	dormant buds	no	dormant buds(1 months)	2.50412
SRR5252884	dormant buds	no	dormant buds(2 months)	2.39945
SRR5252882	dormant buds	no	dormant buds(3 months)	6.41738
SRR5252883	dormant buds	no	dormant buds(3 months)	4.37051
SRR5252880	dormant buds	no	dormant buds(4 months)	4.00287
SRR5252881	dormant buds	no	dormant buds(4 months)	2.88796
SRR5252878	bud break	no	bud break	2.79088
SRR5252879	bud break	no	bud break	7.95802
SRR3744766	flower	no	mature	4.16635
SRR3744767	flower	no	mature	3.06207
SRR3744768	flower	no	mature	3.74201
SRR6308190	stigmas	no	open flowers	4.87378
SRR6308181	styles	no	open flowers	5.20103
SRR6308188	filaments	no	open flowers	4.74686
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.01549
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.02073
SRR6308194	sepals	no	open flowers	5.20016
SRR6308193	receptacles	no	open flowers	5.95741
SRR6308189	ovaries	no	open flowers	5.03756
SRR3384922	fruit	no	1 week after full bloom	25.171
SRR3384921	fruit	no	2 week after full bloom	20.7396
SRR3384920	fruit	no	3 week after full bloom	14.5018
SRR3384919	fruit	no	4 week after full bloom	17.0364
SRR3384923	fruit	no	5 week after full bloom	11.0107
SRR3384918	fruit	no	6 week after full bloom	15.7592
SRR3384917	fruit	no	8 week after full bloom	14.4098
SRR3384916	fruit	no	10 week after full bloom	11.6586
SRR3384915	fruit	no	12 week after full bloom	8.16004
SRR3384914	fruit	no	14 week after full bloom	10.1752
SRR3384913	fruit	no	16 week after full bloom	4.21685
SRR3384912	fruit	no	18 week after full bloom	6.24836
SRR3384911	fruit	no	19 week after full bloom	5.79315
SRR3384910	fruit	no	20 week after full bloom	2.81537
SRR768128	whole fruit	no	25 days post anthesis	9.61462
SRR768129	whole fruit	no	35 days post anthesis	14.2414
SRR768130	whole fruit	no	60 days post anthesis	7.41012
SRR768131	whole fruit	no	87 days post anthesis	2.47896
SRR7343308	immature fruit flesh	no	immature	5.57269
SRR7343309	immature fruit flesh	no	immature	4.46269
SRR6320494	ripe fruit flesh	no	mature	1.03763
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.873019
SRR7403504	fruit	uninfected	mature	2.06939
SRR7403506	fruit	uninfected	mature	2.0767
SRR7403507	fruit	uninfected	mature	1.81686
SRR7403500	fruit	infected with penicillium expansum	mature	0.802265
SRR7403501	fruit	infected with penicillium expansum	mature	1.98424
SRR7403508	fruit	infected with penicillium expansum	mature	2.00259
SRR7403502	fruit	infected with penicillium expansum	mature	1.76948
SRR7403503	fruit	infected with penicillium expansum	mature	0.988183
SRR7403505	fruit	infected with penicillium expansum	mature	1.55445
SRR1613973	Central seeds	no	20DAPF	20.3008
SRR1613974	Central seeds	no	20DAPF	17.1599
SRR1613975	Central seeds	no	20DAPF	18.6788
SRR1613976	Lateral seeds	no	20DAPF	14.7358
SRR1613977	Lateral seeds	no	20DAPF	18.978
SRR1613978	Lateral seeds	no	20DAPF	18.5062
SRR3744786	stem	no	mature	3.46791
SRR3744787	stem	no	mature	5.07152
SRR3744772	stem	no	mature	4.06432
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.37165
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.0713
SRR1089478	leaf	Virus-free	plantlets	6.02275
SRR1089477	leaf	ASGV-infected	plantlets	7.6947
SRR767660	leaf	uninfected	fully developed	18.277
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.09338
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.62775
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	32.4354
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	92.6843
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.9817
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.37504
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.20141
SRR6308182	young leaf	no	immature leaves	16.7247
SRR3744769	leaf	no	mature	2.30894
SRR3744770	leaf	no	mature	1.48968
SRR3744771	leaf	no	mature	2.16961
SRR5405145	leaf	no	mature	1.27578
SRR6320561	leaf	no	mature	4.57118