Gene detail

Detail information of MD15G1384600 Annotation

Gene ID	Annotation
MD15G1384600	K-box region and MADS-box transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1384600	mRNA	Chr15	47494643	47520236	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MIKC
Epigenetic Regulators	FLCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G531100.1.p	1	AGAMOUS-like 24
Rosa multiflora	Rmu_sc0008851.1_g000011.1	1	-
Fragaria vesca	mrna12120.1	1	K-box region and MADS-box transcription factor family protein

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.14	SRF-TF	16	57	3.80E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.371471
SRR5252888	dormant buds	no	dormant buds(0 month)	3.36788
SRR5252889	dormant buds	no	dormant buds(0 month)	3.6414
SRR5252886	dormant buds	no	dormant buds(1 months)	1.14086
SRR5252887	dormant buds	no	dormant buds(1 months)	1.61668
SRR5252884	dormant buds	no	dormant buds(2 months)	0.968188
SRR5252882	dormant buds	no	dormant buds(3 months)	0.97104
SRR5252883	dormant buds	no	dormant buds(3 months)	1.05811
SRR5252880	dormant buds	no	dormant buds(4 months)	0.323035
SRR5252881	dormant buds	no	dormant buds(4 months)	0.268916
SRR5252878	bud break	no	bud break	0.160876
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.205044
SRR3744767	flower	no	mature	0.0599295
SRR3744768	flower	no	mature	0.151333
SRR6308190	stigmas	no	open flowers	0.382509
SRR6308181	styles	no	open flowers	0.219014
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	1.22705
SRR6308193	receptacles	no	open flowers	0.761021
SRR6308189	ovaries	no	open flowers	1.32459
SRR3384922	fruit	no	1 week after full bloom	2.50017
SRR3384921	fruit	no	2 week after full bloom	1.31214
SRR3384920	fruit	no	3 week after full bloom	0.0722099
SRR3384919	fruit	no	4 week after full bloom	0.533691
SRR3384923	fruit	no	5 week after full bloom	0.570977
SRR3384918	fruit	no	6 week after full bloom	0.423744
SRR3384917	fruit	no	8 week after full bloom	1.52944
SRR3384916	fruit	no	10 week after full bloom	4.70226
SRR3384915	fruit	no	12 week after full bloom	8.1496
SRR3384914	fruit	no	14 week after full bloom	8.81594
SRR3384913	fruit	no	16 week after full bloom	8.95146
SRR3384912	fruit	no	18 week after full bloom	10.9206
SRR3384911	fruit	no	19 week after full bloom	8.70162
SRR3384910	fruit	no	20 week after full bloom	5.80377
SRR768128	whole fruit	no	25 days post anthesis	0.819144
SRR768129	whole fruit	no	35 days post anthesis	1.09944
SRR768130	whole fruit	no	60 days post anthesis	0.502722
SRR768131	whole fruit	no	87 days post anthesis	2.01815
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	3.83836
SRR5405143	ripe fruit peel	no	mature	4.76303
SRR6320572	ripe fruit peel	no	mature	0.73574
SRR7403504	fruit	uninfected	mature	2.85663
SRR7403506	fruit	uninfected	mature	4.12702
SRR7403507	fruit	uninfected	mature	3.37214
SRR7403500	fruit	infected with penicillium expansum	mature	1.62862
SRR7403501	fruit	infected with penicillium expansum	mature	2.41684
SRR7403508	fruit	infected with penicillium expansum	mature	2.43919
SRR7403502	fruit	infected with penicillium expansum	mature	1.88585
SRR7403503	fruit	infected with penicillium expansum	mature	1.80544
SRR7403505	fruit	infected with penicillium expansum	mature	1.53271
SRR1613973	Central seeds	no	20DAPF	0.022537
SRR1613974	Central seeds	no	20DAPF	0.170318
SRR1613975	Central seeds	no	20DAPF	0.168169
SRR1613976	Lateral seeds	no	20DAPF	0.132669
SRR1613977	Lateral seeds	no	20DAPF	0.0769729
SRR1613978	Lateral seeds	no	20DAPF	0.0981993
SRR3744786	stem	no	mature	0.879097
SRR3744787	stem	no	mature	0.696137
SRR3744772	stem	no	mature	0.729012
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.22671
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.334252
SRR1089478	leaf	Virus-free	plantlets	5.80626
SRR1089477	leaf	ASGV-infected	plantlets	8.89512
SRR767660	leaf	uninfected	fully developed	9.71306
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	35.0259
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.39222
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.6057
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.5635
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	11.3133
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.44528
SRR6308182	young leaf	no	immature leaves	0.456403
SRR3744769	leaf	no	mature	1.79397
SRR3744770	leaf	no	mature	1.36432
SRR3744771	leaf	no	mature	2.39185
SRR5405145	leaf	no	mature	24.8572
SRR6320561	leaf	no	mature	52.737