Gene detail

Detail information of MD15G1400300 Annotation

Gene ID	Annotation
MD15G1400300	transducin family protein / WD-40 repeat family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1400300	mRNA	Chr15	50078956	50089208	-

Sequences

CDS:

MD15G1400300

GAACAAAAAAAAATAGAAAGACACAACCACTGCGTCCCCCTCCCCTTCCCTCCGCCTCCTTGAAGCCGCAGCCCTCACCCTCCACTACACAAGTTTCCTTACACCACCCAAACTTTCTCTTTCTTCTTCTTCTTCCTAGACGTTGCTGCAAACCCTAATCTTCCTCTCTCTCTCTATCTCTCTCTCTCTCTGTTTCCTTCCCACTGAAACTTCGTCGGCACAATGTCTACCTTAGAAATCGAAGCTCGAGATGTCATCAAGATTGTGCTTCAATTTTGCAAAGAGAATTCTTTGCACCAAACGTTTCAAATGTTGCAGAGTGAGTGCCAGGTATCTTTGAACACTGTCGACAGCGTTGAGACATTTGTTTCTGACATAAATAGTGGAAGGTGGGATGCAATTTTGCCTCAAGTGGCTCAACTTAAGCTTCCCAGGAATAAATTGGAGGATTTGTACGAGCAGATTGTACTCGAAATGATTGAACTTCGAGAATTGGATACTGCTCGTGCTATCTTAAGACAGACTCAGGTAATGGGTGTAGTGAAGCAAGAACAACCTGAAAGATTCTTGCGACTTGAGCACCTCCTTGTCAGAACCTATTTTGATCCAAATGAGGCTTATCAAGAGTCAACAAAAGAAAAGCGGCGTGCTCAAATTGCTCAAGCACTTGCTGCGGAAGTTAGTGTGGTGCCACCATCAAGATTGACAGCTCTAATTGGTCAGGCTCTGAAGTGGCAGCAGCACCAAGGATTGCTTCCCCCAGGAACACAGTTTGACTTATTTCGGGGAACAGCTGCAATGAAACAAGATGTGGATGACTTGTATCCAACAACTCTTTCACACACAATAAAGTTTGGGACAAAAAGTCATGCAGAATGTGCCCGGTTCTCACCAGATGGGCAGTTTCTTGTCTCTTGCTCGGTTGATGGATTTATTGAGGTGTGGGATTACTTAAGTGGGAAACTCAAGAAGGATCTTCAGTACCAGGCTGATGAAAGTTTCATGATGCACGAGGATGCTGTCCTCTGTGTTGAATTTAGCCGAGATTCAGAGATGCTTGCATCTGGGTCACAAGATGGAAAGATCAAAGTTTGGCGTATTAGGACTGGGCAGTGCTTGCGCCGTCTTGAACGTGCACATTCAAAGGGTGTCACCAGTGTTTCCTTCTCTCGTGATGGAAGCCAGTTACTTAGTACATCATTTGACAGCACTGCAAAAATCCATGGCCTAAAATCTGGGAAGGCGTTGAAAGAATTTCGTGGACATTCATCTTATGTAAATGATGCAATCTTTACAAGTGATGGAGCTCGTATAATTACTGCATCTAGCGATTGCACAGTCAAGGTCTGGGATTTGAAGACTACAGACTGTCTGCAGACATTCAAGCCACCTCCTCCTTTAAGGGGAGGTGATGCTTCTGTGAATTCTGTTCATCTTTACCCAAAAAATACAGATCACATCATTGTATGTAATAAGACGTCATCCATTTATGTCATGACACTTCAAGGGCAGGTTGTGAAGAGCTTTTCATCTGGTAAAAAGGAAGGTGGAGATTTTTTGTCAGCTTGTGTGTCACCTAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGAATATGTACTGTTTCAGTCACCAATCTGGTAAACTAGAGCATCTAATGAAGGTCCATGAAAAGGAGGTAATTGGCATCAGCCACCATCCTCACAGGAATCTTGTCGCCACATATAGCGAAGACTGCACACTGAAGTTATGGAAGCCTTGAATCTCTGGTGACTTGTATGTACTGTATGTAATTTTGTTTCCGGCTGCGTGAAGTTAGATTGCTGACATGCATATTTGGTTGGCATTTGAGAAACAGAATATAAGCGGTGTCTGCAAAAACTCACTCAGACCCACAGCCCATTAGGACGTTGGATTCGTAACATTTACTCATCGATCAATCATGGTTTGGATATATTGTATAGCTTTTTACTAAGCAACGTCGGTAATTTTGATTCATAACTCGTATTCGTGTTATGTACTCTAGAACCAAGATTTGGCATAATCTGTTTTCGATTAAATCGAATAAAGTGCTTAGTTTTGTAGACATGGTTTGCTAAGTACTTGTGGGAAGAATAGGCTTTGATTCGAATAATTGAAACCGTCTGTTATTTAGCGTGTAAAACTTGGTTGATACATTTGAGTGCAGTGGTCCTCTTACTTAAGAGGGTTCCAG

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G547900.1.p	1	transducin family protein / WD-40 repeat family protein
Pyrus communis	PCP023023.1	1	-
Pyrus x bretschneideri	Pbr000802.1	1	-
Pyrus x bretschneideri	Pbr004233.1	1	-
Rosa multiflora	Rmu_sc0007883.1_g000005.1	1	-
Rubus occidentalis	Ro05_G19976	1	-
Fragaria vesca	mrna27104.1	1	transducin family protein / WD-40 repeat family protein
Vitis vinifera	GSVIVT01007685001	1	transducin family protein / WD-40 repeat family protein
Solanum lycopersicum	Solyc06g064830.2.1	1	transducin family protein / WD-40 repeat family protein
Populus trichocarpa	Potri.011G156900.1	1	transducin family protein / WD-40 repeat family protein
Nicotiana benthamiana	Niben101Scf02073g08015.1	1	Guanine nucleotide-binding protein subunit beta-like protein
Oryza sativa	LOC_Os01g21940.1	1	"WD domain, G-beta repeat domain containing protein, expressed"
Zea mays	GRMZM2G037683_P01	1	transducin family protein / WD-40 repeat family protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K13111	WD40 repeat-containing protein SMU1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.98409
SRR5252888	dormant buds	no	dormant buds(0 month)	12.1562
SRR5252889	dormant buds	no	dormant buds(0 month)	11.6926
SRR5252886	dormant buds	no	dormant buds(1 months)	12.3537
SRR5252887	dormant buds	no	dormant buds(1 months)	16.014
SRR5252884	dormant buds	no	dormant buds(2 months)	11.7547
SRR5252882	dormant buds	no	dormant buds(3 months)	12.1876
SRR5252883	dormant buds	no	dormant buds(3 months)	13.3673
SRR5252880	dormant buds	no	dormant buds(4 months)	10.8913
SRR5252881	dormant buds	no	dormant buds(4 months)	11.4271
SRR5252878	bud break	no	bud break	11.0857
SRR5252879	bud break	no	bud break	13.9172
SRR3744766	flower	no	mature	4.67167
SRR3744767	flower	no	mature	4.51735
SRR3744768	flower	no	mature	4.42507
SRR6308190	stigmas	no	open flowers	9.15445
SRR6308181	styles	no	open flowers	10.7796
SRR6308188	filaments	no	open flowers	17.2325
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.45989
SRR6308192	pollen	no	open flowers	1.444
SRR6308191	petals	no	open flowers	16.3573
SRR6308194	sepals	no	open flowers	10.3408
SRR6308193	receptacles	no	open flowers	17.1461
SRR6308189	ovaries	no	open flowers	14.6886
SRR3384922	fruit	no	1 week after full bloom	11.1855
SRR3384921	fruit	no	2 week after full bloom	11.5829
SRR3384920	fruit	no	3 week after full bloom	8.13784
SRR3384919	fruit	no	4 week after full bloom	8.66723
SRR3384923	fruit	no	5 week after full bloom	10.147
SRR3384918	fruit	no	6 week after full bloom	8.79325
SRR3384917	fruit	no	8 week after full bloom	8.73108
SRR3384916	fruit	no	10 week after full bloom	11.1142
SRR3384915	fruit	no	12 week after full bloom	11.9162
SRR3384914	fruit	no	14 week after full bloom	10.5098
SRR3384913	fruit	no	16 week after full bloom	11.8501
SRR3384912	fruit	no	18 week after full bloom	11.6582
SRR3384911	fruit	no	19 week after full bloom	11.4591
SRR3384910	fruit	no	20 week after full bloom	11.0522
SRR768128	whole fruit	no	25 days post anthesis	10.9639
SRR768129	whole fruit	no	35 days post anthesis	15.5927
SRR768130	whole fruit	no	60 days post anthesis	10.6722
SRR768131	whole fruit	no	87 days post anthesis	15.0075
SRR7343308	immature fruit flesh	no	immature	13.2097
SRR7343309	immature fruit flesh	no	immature	12.7377
SRR6320494	ripe fruit flesh	no	mature	11.4084
SRR5405143	ripe fruit peel	no	mature	11.9006
SRR6320572	ripe fruit peel	no	mature	5.88362
SRR7403504	fruit	uninfected	mature	10.1119
SRR7403506	fruit	uninfected	mature	9.63106
SRR7403507	fruit	uninfected	mature	10.8375
SRR7403500	fruit	infected with penicillium expansum	mature	9.85405
SRR7403501	fruit	infected with penicillium expansum	mature	8.34476
SRR7403508	fruit	infected with penicillium expansum	mature	9.68236
SRR7403502	fruit	infected with penicillium expansum	mature	10.5422
SRR7403503	fruit	infected with penicillium expansum	mature	10.7854
SRR7403505	fruit	infected with penicillium expansum	mature	9.65027
SRR1613973	Central seeds	no	20DAPF	19.5477
SRR1613974	Central seeds	no	20DAPF	20.0029
SRR1613975	Central seeds	no	20DAPF	19.3979
SRR1613976	Lateral seeds	no	20DAPF	16.6898
SRR1613977	Lateral seeds	no	20DAPF	17.1383
SRR1613978	Lateral seeds	no	20DAPF	17.5693
SRR3744786	stem	no	mature	7.03883
SRR3744787	stem	no	mature	7.60196
SRR3744772	stem	no	mature	7.58215
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.2863
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.4047
SRR1089478	leaf	Virus-free	plantlets	9.84021
SRR1089477	leaf	ASGV-infected	plantlets	9.41583
SRR767660	leaf	uninfected	fully developed	5.46597
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.23037
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.23182
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.76548
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	12.8016
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.41337
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.51988
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.52606
SRR6308182	young leaf	no	immature leaves	16.2713
SRR3744769	leaf	no	mature	4.96944
SRR3744770	leaf	no	mature	5.14548
SRR3744771	leaf	no	mature	5.76568
SRR5405145	leaf	no	mature	5.3637
SRR6320561	leaf	no	mature	7.35489