Gene detail

Detail information of MD15G1403600 Annotation

Gene ID	Annotation
MD15G1403600	K-box region and MADS-box transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1403600	mRNA	Chr15	50451087	50459165	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MIKC
Epigenetic Regulators	FLCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus x bretschneideri	Pbr000828.1	1	-
Solanum lycopersicum	Solyc11g028020.1.1	1	K-box region and MADS-box transcription factor family protein
Solanum lycopersicum	Solyc02g071730.2.1	1	K-box region and MADS-box transcription factor family protein
Solanum lycopersicum	Solyc02g084630.2.1	1	K-box region and MADS-box transcription factor family protein
Nicotiana benthamiana	Niben101Scf00320g01005.1	1	MADS-box transcription factor 3
Nicotiana benthamiana	Niben101Scf02073g09008.1	0.938	MADS-box transcription factor 3
Oryza sativa	LOC_Os12g10540.2	1	"OsMADS13 - MADS-box family gene with MIKCc type-box, expressed"
Zea mays	GRMZM2G018589_P01	1	K-box region and MADS-box transcription factor family protein

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K09264	"MADS-box transcription factor, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.14	SRF-TF	10	57	1.90E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.043059
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.200916
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.187147
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.372809
SRR5252879	bud break	no	bud break	0.103351
SRR3744766	flower	no	mature	1.27321
SRR3744767	flower	no	mature	2.13031
SRR3744768	flower	no	mature	1.62682
SRR6308190	stigmas	no	open flowers	9.41731
SRR6308181	styles	no	open flowers	1.7681
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.36987
SRR6308192	pollen	no	open flowers	15.658
SRR6308191	petals	no	open flowers	0.486812
SRR6308194	sepals	no	open flowers	0.314608
SRR6308193	receptacles	no	open flowers	16.5565
SRR6308189	ovaries	no	open flowers	0.407412
SRR3384922	fruit	no	1 week after full bloom	16.9433
SRR3384921	fruit	no	2 week after full bloom	14.2539
SRR3384920	fruit	no	3 week after full bloom	0.167345
SRR3384919	fruit	no	4 week after full bloom	1.00491
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.163669
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.076742
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.103724
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.09336
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	12.9592
SRR768129	whole fruit	no	35 days post anthesis	7.86759
SRR768130	whole fruit	no	60 days post anthesis	3.68565
SRR768131	whole fruit	no	87 days post anthesis	1.16809
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	84.938
SRR1613974	Central seeds	no	20DAPF	95.4484
SRR1613975	Central seeds	no	20DAPF	93.1833
SRR1613976	Lateral seeds	no	20DAPF	94.4613
SRR1613977	Lateral seeds	no	20DAPF	94.4584
SRR1613978	Lateral seeds	no	20DAPF	85.2426
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0