Gene detail

Detail information of MD15G1422600 Annotation

Gene ID	Annotation
MD15G1422600	ribosomal protein L5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0302	large subunit ribosomal protein L5e tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] protein CWC15 tRNA (adenine-N1-)-methyltransferase activity 5S rRNA binding ribose phosphate diphosphokinase activity tRNA methylation regulation of cellulose biosynthetic process plant-type cell wall assembly pyrimidine ribonucleotide biosynthetic process rRNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1422600	mRNA	Chr15	52426595	52429476	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G25520.1	1	ATL5;OLI5;PGY3;RPL5A\|ribosomal protein L5;OLIGOCELLULA 5;PIGGYBACK3;RIBOSOMAL PROTEIN L5 A
Arabidopsis thaliana	AT5G39740.2	1	OLI7;RPL5B\|OLIGOCELLULA 7;ribosomal protein L5 B
Arabidopsis thaliana	AT5G39740.1	1	OLI7;RPL5B\|OLIGOCELLULA 7;ribosomal protein L5 B
Pyrus communis	PCP015354.1	1	-
Rosa multiflora	Rmu_sc0008647.1_g000012.1	1	-
Populus trichocarpa	Potri.014G174000.1	1	ribosomal protein L5 B
Populus trichocarpa	Potri.014G197100.1	1	ribosomal protein L5 B
Oryza sativa	LOC_Os01g67134.1	1	"ribosomal L18p/L5e family protein, putative, expressed"
Zea mays	GRMZM2G163081_P01	1	60S ribosomal protein L5-1;

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0008097	5S rRNA binding	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02932	large subunit ribosomal protein L5e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14204.2	Ribosomal_L18_c	191	280	3.20E-35

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	190.712
SRR5252888	dormant buds	no	dormant buds(0 month)	73.0436
SRR5252889	dormant buds	no	dormant buds(0 month)	84.8335
SRR5252886	dormant buds	no	dormant buds(1 months)	46.987
SRR5252887	dormant buds	no	dormant buds(1 months)	46.5751
SRR5252884	dormant buds	no	dormant buds(2 months)	60.5516
SRR5252882	dormant buds	no	dormant buds(3 months)	65.1736
SRR5252883	dormant buds	no	dormant buds(3 months)	61.1134
SRR5252880	dormant buds	no	dormant buds(4 months)	77.4074
SRR5252881	dormant buds	no	dormant buds(4 months)	90.4685
SRR5252878	bud break	no	bud break	65.9902
SRR5252879	bud break	no	bud break	110.654
SRR3744766	flower	no	mature	54.0062
SRR3744767	flower	no	mature	51.9117
SRR3744768	flower	no	mature	51.2961
SRR6308190	stigmas	no	open flowers	51.3517
SRR6308181	styles	no	open flowers	59.1522
SRR6308188	filaments	no	open flowers	101.324
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	30.9282
SRR6308192	pollen	no	open flowers	15.3569
SRR6308191	petals	no	open flowers	103.107
SRR6308194	sepals	no	open flowers	72.131
SRR6308193	receptacles	no	open flowers	107.228
SRR6308189	ovaries	no	open flowers	82.8386
SRR3384922	fruit	no	1 week after full bloom	136.154
SRR3384921	fruit	no	2 week after full bloom	117.083
SRR3384920	fruit	no	3 week after full bloom	115.831
SRR3384919	fruit	no	4 week after full bloom	116.39
SRR3384923	fruit	no	5 week after full bloom	89.3619
SRR3384918	fruit	no	6 week after full bloom	91.3695
SRR3384917	fruit	no	8 week after full bloom	94.0789
SRR3384916	fruit	no	10 week after full bloom	81.6061
SRR3384915	fruit	no	12 week after full bloom	85.7981
SRR3384914	fruit	no	14 week after full bloom	80.3665
SRR3384913	fruit	no	16 week after full bloom	83.5615
SRR3384912	fruit	no	18 week after full bloom	64.5097
SRR3384911	fruit	no	19 week after full bloom	66.6989
SRR3384910	fruit	no	20 week after full bloom	56.9996
SRR768128	whole fruit	no	25 days post anthesis	127.957
SRR768129	whole fruit	no	35 days post anthesis	171.899
SRR768130	whole fruit	no	60 days post anthesis	120.725
SRR768131	whole fruit	no	87 days post anthesis	82.2565
SRR7343308	immature fruit flesh	no	immature	85.6783
SRR7343309	immature fruit flesh	no	immature	94.4406
SRR6320494	ripe fruit flesh	no	mature	53.6959
SRR5405143	ripe fruit peel	no	mature	65.7866
SRR6320572	ripe fruit peel	no	mature	47.3748
SRR7403504	fruit	uninfected	mature	63.0997
SRR7403506	fruit	uninfected	mature	59.7832
SRR7403507	fruit	uninfected	mature	58.3916
SRR7403500	fruit	infected with penicillium expansum	mature	71.0557
SRR7403501	fruit	infected with penicillium expansum	mature	73.3822
SRR7403508	fruit	infected with penicillium expansum	mature	76.6914
SRR7403502	fruit	infected with penicillium expansum	mature	70.5841
SRR7403503	fruit	infected with penicillium expansum	mature	70.8195
SRR7403505	fruit	infected with penicillium expansum	mature	66.3607
SRR1613973	Central seeds	no	20DAPF	141.763
SRR1613974	Central seeds	no	20DAPF	138.11
SRR1613975	Central seeds	no	20DAPF	137.467
SRR1613976	Lateral seeds	no	20DAPF	118.427
SRR1613977	Lateral seeds	no	20DAPF	136.5
SRR1613978	Lateral seeds	no	20DAPF	132.002
SRR3744786	stem	no	mature	50.5026
SRR3744787	stem	no	mature	53.0576
SRR3744772	stem	no	mature	52.1999
SRX765691	seedling shoot apex	no	4-6 week old seedling	139.592
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	125.891
SRR1089478	leaf	Virus-free	plantlets	84.2069
SRR1089477	leaf	ASGV-infected	plantlets	71.9817
SRR767660	leaf	uninfected	fully developed	93.4939
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	87.1029
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	82.8154
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	139.489
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	79.7887
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	66.4998
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	104.696
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	80.1033
SRR6308182	young leaf	no	immature leaves	147.58
SRR3744769	leaf	no	mature	63.705
SRR3744770	leaf	no	mature	64.8396
SRR3744771	leaf	no	mature	60.3734
SRR5405145	leaf	no	mature	51.309
SRR6320561	leaf	no	mature	68.5657