Gene detail

Detail information of MD15G1430500 Annotation

Gene ID	Annotation
MD15G1430500	magnesium transporter 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1430500	mRNA	Chr15	53085165	53088485	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	MIT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G58970.1	1	MGT6;MRS2-4\|magnesium transporter 6;
Prunus persica	Prupe.1G575700.1.p	1	magnesium transporter 6
Pyrus x bretschneideri	Pbr003194.1	1	-
Pyrus x bretschneideri	Pbr040588.1	1	-
Pyrus x bretschneideri	Pbr040585.1	0.672	-
Pyrus x bretschneideri	Pbr039912.1	0.662	-
Pyrus x bretschneideri	Pbr039915.1	0.662	-
Vitis vinifera	GSVIVT01022826001	1	magnesium transporter 6
Solanum lycopersicum	Solyc01g103890.2.1	1	magnesium transporter 6
Populus trichocarpa	Potri.006G081700.1	1	magnesium transporter 6
Nicotiana benthamiana	Niben101Scf01970g07027.1	1	Magnesium transporter MRS2-4
Nicotiana benthamiana	Niben101Scf11444g00005.1	0.619	Magnesium transporter MRS2-4
Oryza sativa	LOC_Os10g39790.3	1	"CorA-like magnesium transporter protein, putative, expressed"
Oryza sativa	LOC_Os03g04480.1	1	"CorA-like magnesium transporter protein, putative, expressed"
Zea mays	GRMZM2G453832_P01	1	-
Zea mays	GRMZM2G145794_P01	0.794	-

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0015693	magnesium ion transport	biological_process
GO:0055085	transmembrane transport	biological_process
GO:0015095	magnesium ion transmembrane transporter activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.1944
SRR5252888	dormant buds	no	dormant buds(0 month)	2.23597
SRR5252889	dormant buds	no	dormant buds(0 month)	2.10458
SRR5252886	dormant buds	no	dormant buds(1 months)	2.24862
SRR5252887	dormant buds	no	dormant buds(1 months)	3.08163
SRR5252884	dormant buds	no	dormant buds(2 months)	2.31003
SRR5252882	dormant buds	no	dormant buds(3 months)	2.92123
SRR5252883	dormant buds	no	dormant buds(3 months)	2.14041
SRR5252880	dormant buds	no	dormant buds(4 months)	2.51328
SRR5252881	dormant buds	no	dormant buds(4 months)	2.23171
SRR5252878	bud break	no	bud break	1.80238
SRR5252879	bud break	no	bud break	1.8876
SRR3744766	flower	no	mature	6.81388
SRR3744767	flower	no	mature	7.74452
SRR3744768	flower	no	mature	8.42251
SRR6308190	stigmas	no	open flowers	4.80746
SRR6308181	styles	no	open flowers	2.68813
SRR6308188	filaments	no	open flowers	2.27628
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	70.2656
SRR6308192	pollen	no	open flowers	340.593
SRR6308191	petals	no	open flowers	3.18445
SRR6308194	sepals	no	open flowers	6.51523
SRR6308193	receptacles	no	open flowers	1.7776
SRR6308189	ovaries	no	open flowers	2.38942
SRR3384922	fruit	no	1 week after full bloom	3.11195
SRR3384921	fruit	no	2 week after full bloom	1.37802
SRR3384920	fruit	no	3 week after full bloom	1.07855
SRR3384919	fruit	no	4 week after full bloom	0.996424
SRR3384923	fruit	no	5 week after full bloom	1.26345
SRR3384918	fruit	no	6 week after full bloom	1.40648
SRR3384917	fruit	no	8 week after full bloom	1.0153
SRR3384916	fruit	no	10 week after full bloom	1.40139
SRR3384915	fruit	no	12 week after full bloom	1.41428
SRR3384914	fruit	no	14 week after full bloom	1.08786
SRR3384913	fruit	no	16 week after full bloom	1.11418
SRR3384912	fruit	no	18 week after full bloom	0.575083
SRR3384911	fruit	no	19 week after full bloom	1.053
SRR3384910	fruit	no	20 week after full bloom	0.82447
SRR768128	whole fruit	no	25 days post anthesis	1.53299
SRR768129	whole fruit	no	35 days post anthesis	1.3717
SRR768130	whole fruit	no	60 days post anthesis	0.836288
SRR768131	whole fruit	no	87 days post anthesis	0.944221
SRR7343308	immature fruit flesh	no	immature	2.50656
SRR7343309	immature fruit flesh	no	immature	3.33455
SRR6320494	ripe fruit flesh	no	mature	2.93392
SRR5405143	ripe fruit peel	no	mature	0.776854
SRR6320572	ripe fruit peel	no	mature	2.31589
SRR7403504	fruit	uninfected	mature	1.12611
SRR7403506	fruit	uninfected	mature	0.940595
SRR7403507	fruit	uninfected	mature	1.24818
SRR7403500	fruit	infected with penicillium expansum	mature	1.01529
SRR7403501	fruit	infected with penicillium expansum	mature	2.41067
SRR7403508	fruit	infected with penicillium expansum	mature	1.23096
SRR7403502	fruit	infected with penicillium expansum	mature	1.90343
SRR7403503	fruit	infected with penicillium expansum	mature	1.50069
SRR7403505	fruit	infected with penicillium expansum	mature	1.62997
SRR1613973	Central seeds	no	20DAPF	2.5207
SRR1613974	Central seeds	no	20DAPF	2.38967
SRR1613975	Central seeds	no	20DAPF	2.18041
SRR1613976	Lateral seeds	no	20DAPF	1.80303
SRR1613977	Lateral seeds	no	20DAPF	2.33267
SRR1613978	Lateral seeds	no	20DAPF	2.45438
SRR3744786	stem	no	mature	2.31515
SRR3744787	stem	no	mature	2.52563
SRR3744772	stem	no	mature	2.60442
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.30825
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.78921
SRR1089478	leaf	Virus-free	plantlets	0.997755
SRR1089477	leaf	ASGV-infected	plantlets	1.12574
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.33217
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.43746
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.67172
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.821236
SRR6308182	young leaf	no	immature leaves	2.58404
SRR3744769	leaf	no	mature	1.21668
SRR3744770	leaf	no	mature	1.62856
SRR3744771	leaf	no	mature	1.42011
SRR5405145	leaf	no	mature	6.77915
SRR6320561	leaf	no	mature	3.92497