Gene detail

Detail information of MD15G1430900 Annotation

Gene ID	Annotation
MD15G1430900	COBRA-like protein 6 precursor

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1430900	mRNA	Chr15	53102973	53105917	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP016765.1	1	-
Pyrus x bretschneideri	Pbr039918.1	1	-
Pyrus x bretschneideri	Pbr039909.1	1	-
Fragaria vesca	mrna12525.1	1	COBRA-like protein 1 precursor
Fragaria vesca	mrna11018.1	1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Vitis vinifera	GSVIVT01023291001	1	COBRA-like protein 2 precursor
Nicotiana benthamiana	Niben101Scf01970g07025.1	1	COBRA-like protein 6

Gene Ontology

GO term	Description	Category
GO:0030246	carbohydrate binding	molecular_function
GO:0031225	anchored component of membrane	cellular component
GO:0010215	cellulose microfibril organization	biological_process
GO:0016049	cell growth	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.38223
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.069829
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0709874
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.0268942
SRR3744767	flower	no	mature	0.0471
SRR3744768	flower	no	mature	0
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.112024
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	1.1399
SRR3384921	fruit	no	2 week after full bloom	2.79246
SRR3384920	fruit	no	3 week after full bloom	0.0571815
SRR3384919	fruit	no	4 week after full bloom	0.0528273
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.0559256
SRR3384917	fruit	no	8 week after full bloom	0.0807422
SRR3384916	fruit	no	10 week after full bloom	0.209781
SRR3384915	fruit	no	12 week after full bloom	0.310264
SRR3384914	fruit	no	14 week after full bloom	0.0601824
SRR3384913	fruit	no	16 week after full bloom	0.0708848
SRR3384912	fruit	no	18 week after full bloom	0.0665217
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	7.86625
SRR768129	whole fruit	no	35 days post anthesis	6.8948
SRR768130	whole fruit	no	60 days post anthesis	1.19584
SRR768131	whole fruit	no	87 days post anthesis	0.30004
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	56.5912
SRR1613974	Central seeds	no	20DAPF	53.6498
SRR1613975	Central seeds	no	20DAPF	55.3208
SRR1613976	Lateral seeds	no	20DAPF	51.829
SRR1613977	Lateral seeds	no	20DAPF	51.4156
SRR1613978	Lateral seeds	no	20DAPF	51.8727
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.082807
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0231151
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.701025
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.168776
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.455714
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.148979
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0.0293448
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0