Gene detail

Detail information of MD15G1436700 Annotation

Gene ID	Annotation
MD15G1436700	SNARE-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1436700	mRNA	Chr15	53674968	53676017	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G580600.1.p	0.94	SNARE-like superfamily protein
Prunus persica	Prupe.1G580600.5.p	1	SNARE-like superfamily protein
Prunus persica	Prupe.1G580600.2.p	0.94	SNARE-like superfamily protein
Prunus persica	Prupe.1G580600.4.p	0.94	SNARE-like superfamily protein
Prunus persica	Prupe.1G580600.3.p	0.94	SNARE-like superfamily protein
Pyrus communis	PCP036174.1	1	-
Pyrus x bretschneideri	Pbr042810.1	1	-
Rosa multiflora	Rmu_sc0007322.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0010554.1_g000002.1	1	-
Rubus occidentalis	Ro07_G18089	1	-
Rubus occidentalis	Ro07_G33820	0.976	-
Fragaria vesca	mrna09265.1	1	SNARE-like superfamily protein
Nicotiana benthamiana	Niben101Scf12266g02013.1	1	Trafficking protein particle complex subunit 2
Nicotiana benthamiana	Niben101Scf07382g01006.1	0.861	Trafficking protein particle complex subunit 2
Zea mays	GRMZM2G061922_P01	1	Trafficking protein particle complex protein 2;
Zea mays	GRMZM2G097568_P01	0.836	Trafficking protein particle complex protein 2;

Gene Ontology

GO term	Description	Category
GO:0006888	ER to Golgi vesicle-mediated transport	biological_process
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K20301	trafficking protein particle complex subunit 2	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	20.5561
SRR5252888	dormant buds	no	dormant buds(0 month)	3.78599
SRR5252889	dormant buds	no	dormant buds(0 month)	3.16757
SRR5252886	dormant buds	no	dormant buds(1 months)	1.60312
SRR5252887	dormant buds	no	dormant buds(1 months)	2.27173
SRR5252884	dormant buds	no	dormant buds(2 months)	2.72096
SRR5252882	dormant buds	no	dormant buds(3 months)	4.5483
SRR5252883	dormant buds	no	dormant buds(3 months)	4.46053
SRR5252880	dormant buds	no	dormant buds(4 months)	2.72354
SRR5252881	dormant buds	no	dormant buds(4 months)	4.03069
SRR5252878	bud break	no	bud break	1.80849
SRR5252879	bud break	no	bud break	2.25609
SRR3744766	flower	no	mature	13.3066
SRR3744767	flower	no	mature	14.6098
SRR3744768	flower	no	mature	14.0091
SRR6308190	stigmas	no	open flowers	14.0486
SRR6308181	styles	no	open flowers	16.0681
SRR6308188	filaments	no	open flowers	9.79808
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	13.5857
SRR6308192	pollen	no	open flowers	47.3053
SRR6308191	petals	no	open flowers	8.28653
SRR6308194	sepals	no	open flowers	4.38512
SRR6308193	receptacles	no	open flowers	14.5589
SRR6308189	ovaries	no	open flowers	14.6219
SRR3384922	fruit	no	1 week after full bloom	22.5817
SRR3384921	fruit	no	2 week after full bloom	18.4477
SRR3384920	fruit	no	3 week after full bloom	21.5227
SRR3384919	fruit	no	4 week after full bloom	16.5073
SRR3384923	fruit	no	5 week after full bloom	17.4822
SRR3384918	fruit	no	6 week after full bloom	19.0641
SRR3384917	fruit	no	8 week after full bloom	27.5237
SRR3384916	fruit	no	10 week after full bloom	15.0844
SRR3384915	fruit	no	12 week after full bloom	16.746
SRR3384914	fruit	no	14 week after full bloom	15.3864
SRR3384913	fruit	no	16 week after full bloom	17.1158
SRR3384912	fruit	no	18 week after full bloom	12.9916
SRR3384911	fruit	no	19 week after full bloom	14.9525
SRR3384910	fruit	no	20 week after full bloom	17.7385
SRR768128	whole fruit	no	25 days post anthesis	13.4122
SRR768129	whole fruit	no	35 days post anthesis	16.9518
SRR768130	whole fruit	no	60 days post anthesis	18.171
SRR768131	whole fruit	no	87 days post anthesis	16.1324
SRR7343308	immature fruit flesh	no	immature	17.7095
SRR7343309	immature fruit flesh	no	immature	15.2037
SRR6320494	ripe fruit flesh	no	mature	35.1557
SRR5405143	ripe fruit peel	no	mature	8.63009
SRR6320572	ripe fruit peel	no	mature	50.9941
SRR7403504	fruit	uninfected	mature	20.6222
SRR7403506	fruit	uninfected	mature	23.2696
SRR7403507	fruit	uninfected	mature	23.2199
SRR7403500	fruit	infected with penicillium expansum	mature	20.5928
SRR7403501	fruit	infected with penicillium expansum	mature	23.8183
SRR7403508	fruit	infected with penicillium expansum	mature	27.8614
SRR7403502	fruit	infected with penicillium expansum	mature	24.0457
SRR7403503	fruit	infected with penicillium expansum	mature	19.5833
SRR7403505	fruit	infected with penicillium expansum	mature	23.1354
SRR1613973	Central seeds	no	20DAPF	31.4
SRR1613974	Central seeds	no	20DAPF	26.656
SRR1613975	Central seeds	no	20DAPF	29.5781
SRR1613976	Lateral seeds	no	20DAPF	23.6087
SRR1613977	Lateral seeds	no	20DAPF	32.1377
SRR1613978	Lateral seeds	no	20DAPF	31.1565
SRR3744786	stem	no	mature	17.7797
SRR3744787	stem	no	mature	14.122
SRR3744772	stem	no	mature	13.8772
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.005
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.74641
SRR1089478	leaf	Virus-free	plantlets	3.60348
SRR1089477	leaf	ASGV-infected	plantlets	3.10575
SRR767660	leaf	uninfected	fully developed	10.9298
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	14.7373
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.98089
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	15.7047
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	9.3332
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.78335
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.20028
SRR6308182	young leaf	no	immature leaves	12.4496
SRR3744769	leaf	no	mature	14.3674
SRR3744770	leaf	no	mature	12.0921
SRR3744771	leaf	no	mature	12.8221
SRR5405145	leaf	no	mature	12.2807
SRR6320561	leaf	no	mature	18.0308