Gene detail

Detail information of MD16G1003600 Annotation

Gene ID	Annotation
MD16G1003600	mRNA splicing factor

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0426	spliceosomal complex endosomal transport mitotic nuclear division cell morphogenesis vacuole organization leaf senescence cell growth splicing factor 3A subunit 1 protein targeting to vacuole mitochondrial proton-transporting ATP synthase complex Golgi vesicle transport Golgi organization catalytic activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1003600	mRNA	Chr16	215812	218862	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G08290.1	1	YLS8\|YELLOW-LEAF-SPECIFIC GENE 8
Prunus persica	Prupe.1G348600.3.p	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Prunus persica	Prupe.1G348600.5.p	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Prunus persica	Prupe.1G348600.4.p	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Pyrus communis	PCP005255.1	1	-
Pyrus communis	PCP020940.1	1	-
Pyrus x bretschneideri	Pbr012255.1	1	-
Rosa multiflora	Rmu_sc0009480.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0002711.1_g000022.1	1	-
Rubus occidentalis	Ro03_G05172	1	-
Fragaria vesca	mrna29768.1	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Vitis vinifera	GSVIVT01018060001	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Solanum lycopersicum	Solyc04g009230.2.1	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Solanum lycopersicum	Solyc06g083570.2.1	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Populus trichocarpa	Potri.007G072700.1	1	"mRNA splicing factor, thioredoxin-like U5 snRNP"
Nicotiana benthamiana	Niben101Scf07722g01003.1	1	Thioredoxin-like protein 4A
Oryza sativa	LOC_Os07g10256.1	1	"mitosis protein dim1, putative, expressed"
Oryza sativa	LOC_Os10g34520.1	1	"mitosis protein dim1, putative, expressed"
Zea mays	GRMZM2G108277_P01	1	Mitosis protein dim1

Gene Ontology

GO term	Description	Category
GO:0005681	spliceosomal complex	cellular component
GO:0007067	mitotic nuclear division	biological_process

KEGG

KO	Description	Enzyme
K12859	"U5 snRNP protein, DIM1 family"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02966.12	DIM1	4	40	1.30E-12
PF02966.12	DIM1	49	181	3.80E-66

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	47.1618
SRR5252888	dormant buds	no	dormant buds(0 month)	7.44606
SRR5252889	dormant buds	no	dormant buds(0 month)	9.98784
SRR5252886	dormant buds	no	dormant buds(1 months)	9.2928
SRR5252887	dormant buds	no	dormant buds(1 months)	9.17096
SRR5252884	dormant buds	no	dormant buds(2 months)	12.3928
SRR5252882	dormant buds	no	dormant buds(3 months)	12.4293
SRR5252883	dormant buds	no	dormant buds(3 months)	8.31099
SRR5252880	dormant buds	no	dormant buds(4 months)	10.713
SRR5252881	dormant buds	no	dormant buds(4 months)	8.60532
SRR5252878	bud break	no	bud break	15.7249
SRR5252879	bud break	no	bud break	16.5031
SRR3744766	flower	no	mature	29.9629
SRR3744767	flower	no	mature	31.2965
SRR3744768	flower	no	mature	29.971
SRR6308190	stigmas	no	open flowers	66.4046
SRR6308181	styles	no	open flowers	63.2153
SRR6308188	filaments	no	open flowers	57.7434
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	68.4061
SRR6308192	pollen	no	open flowers	194.901
SRR6308191	petals	no	open flowers	47.1596
SRR6308194	sepals	no	open flowers	40.3629
SRR6308193	receptacles	no	open flowers	48.3578
SRR6308189	ovaries	no	open flowers	49.3419
SRR3384922	fruit	no	1 week after full bloom	65.0765
SRR3384921	fruit	no	2 week after full bloom	57.5557
SRR3384920	fruit	no	3 week after full bloom	87.7424
SRR3384919	fruit	no	4 week after full bloom	44.7233
SRR3384923	fruit	no	5 week after full bloom	51.2815
SRR3384918	fruit	no	6 week after full bloom	50.0589
SRR3384917	fruit	no	8 week after full bloom	60.1675
SRR3384916	fruit	no	10 week after full bloom	51.5687
SRR3384915	fruit	no	12 week after full bloom	75.2434
SRR3384914	fruit	no	14 week after full bloom	71.2505
SRR3384913	fruit	no	16 week after full bloom	53.447
SRR3384912	fruit	no	18 week after full bloom	51.7705
SRR3384911	fruit	no	19 week after full bloom	51.7639
SRR3384910	fruit	no	20 week after full bloom	45.2655
SRR768128	whole fruit	no	25 days post anthesis	53.1425
SRR768129	whole fruit	no	35 days post anthesis	45.853
SRR768130	whole fruit	no	60 days post anthesis	33.488
SRR768131	whole fruit	no	87 days post anthesis	24.7683
SRR7343308	immature fruit flesh	no	immature	41.5212
SRR7343309	immature fruit flesh	no	immature	33.6781
SRR6320494	ripe fruit flesh	no	mature	46.4615
SRR5405143	ripe fruit peel	no	mature	24.2695
SRR6320572	ripe fruit peel	no	mature	47.1054
SRR7403504	fruit	uninfected	mature	27.5574
SRR7403506	fruit	uninfected	mature	28.3382
SRR7403507	fruit	uninfected	mature	29.2461
SRR7403500	fruit	infected with penicillium expansum	mature	32.4945
SRR7403501	fruit	infected with penicillium expansum	mature	40.0908
SRR7403508	fruit	infected with penicillium expansum	mature	38.198
SRR7403502	fruit	infected with penicillium expansum	mature	39.3768
SRR7403503	fruit	infected with penicillium expansum	mature	29.495
SRR7403505	fruit	infected with penicillium expansum	mature	32.0033
SRR1613973	Central seeds	no	20DAPF	28.8878
SRR1613974	Central seeds	no	20DAPF	26.7929
SRR1613975	Central seeds	no	20DAPF	33.1713
SRR1613976	Lateral seeds	no	20DAPF	26.4275
SRR1613977	Lateral seeds	no	20DAPF	35.3323
SRR1613978	Lateral seeds	no	20DAPF	31.4679
SRR3744786	stem	no	mature	19.6588
SRR3744787	stem	no	mature	19.4845
SRR3744772	stem	no	mature	16.5761
SRX765691	seedling shoot apex	no	4-6 week old seedling	23.977
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	32.7106
SRR1089478	leaf	Virus-free	plantlets	8.54794
SRR1089477	leaf	ASGV-infected	plantlets	8.58071
SRR767660	leaf	uninfected	fully developed	12.9845
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.50705
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	16.7116
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	49.3603
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	21.6909
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	28.5382
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	19.8125
SRR6308182	young leaf	no	immature leaves	34.1773
SRR3744769	leaf	no	mature	15.6373
SRR3744770	leaf	no	mature	16.6632
SRR3744771	leaf	no	mature	17.1614
SRR5405145	leaf	no	mature	32.8931
SRR6320561	leaf	no	mature	54.5134