Gene detail

Detail information of MD16G1006300 Annotation

Gene ID	Annotation
MD16G1006300	ARF-GAP domain 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0539	regulation of chromosome organization nuclear-transcribed mRNA catabolic process tissue development positive regulation of organelle organization organ morphogenesis cytosol DNA metabolic process mismatch repair

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1006300	mRNA	Chr16	488818	496030	+

Sequences

CDS:

MD16G1006300

GGGAAATTTGACCAAATAACCCCTCCGCGCGAATTCGATCTGGAAAACCCTGAGAACTGGCTGGAGAATCGAGCGAAATACAGAATAAAGAAAGAAAGAGACAAGCAGAGATTGCGATTGGATCTCCAAATTTTCAGAGGGGAAAAAAATGGCGGCCTTCATCAAGCTCGAGGATTCCCCAATGTTTCAGAAGCAGATGTATTCTATGGAACAAACAGCTGATGAGTTGAAAGATCGCTGCCAAAAATTATGCAAAGGGTCTAAGAAGCTTATGGGGGCTCTGGAAGAAGCATGCAATGGAGACACCATTTTTTCAGAATCTTTGGAAGCATTTGGTGGTGGACTGGACGATCCTATTAGTGTATCCATTGGAGGTCCAGTATTATCCAAATTCGTTACTGCATTTCAAGAGCTTGCCACTTATAAGGAGCTTCTGCGCTCCCAAGTAGAGCACGTTTTAGTTGATCGGTTGATGCACTTTATGACTGTTGATCTGCAAGATGCAAAGGAGTCCCGACGTCAATTCGACAAAGCTATACATGGTTATGATCAGGCACGGGAAAAGTTTGTGTCCTTAAAGAAGAATACACGGGAAGACATTGTTGCAGAACTAGAGGAGGATCTACAAAATTCAAAATCAACATTTGAGAAAAGCCGCTTCAACCTAGTAAACTCACTAATGAATATTGAAGCAAAAAAGAAGTATGAGTTTTTGGAGTCTATTAGTGCAATCATGGATGCGCATCTGAGATACTTTAAGCTGGGATACGAGTTATTCAGCCAAATGGAACCATATATTCACCAGGTGTTAACGTACGCACAACAATCTAAAGAACAGGCCACTGTTGAACAAGATAAACTTCACAAAAGGATTCAGGAATATAGGACACAAGCTGAGCTGGACAGTATACGAGCTTCCAGTAATATTGAGCCTCCTGCAGTGGCTGATGGAAATCGCGCCTTTGGTTTAGCTTCTCACAAAAACATAGAAGCAATCATGCAGTCCAGTGCAAATGGGAAGGTCCAGACGATCAAGCAAGGATATCTAGTGAAACGATCTTCAAGTTTGAGGGGAGATTGGAAGAGGAGGTTTTTCGTTCTGAACAGTCATGGGGCTTTATTTTATTACAGAATTAAGGGTACCAAACCCATGGGCGGCTCCCAGTCACATCATTTCACTCGCTCACCGGAACATCACAGTGGTGTGTTTAGCAGATTTCGTTCAAGACATAGGGTAGCGTCACTTAATGAAAACATTCTGGGCTGCCGTACTGTTGATCTGCGTACCTCAACAATAAAGATGGACGCAGAGGATACAGATCTTCGACTTTGCTTTAGAATAATATCCCCATTGAAAACTTATACATTGCAGGCTGAAAATGAAGCTGATAGGATGGATTGGACAAACAAAATAGCAGGAGTTATTGCATCTCTTTTGAATTTTCAGCTTCTTGACCAGCCACATCCTGGAACTGTGAATCACGAGAGTAGTAAATCTTCTCTTGGTACTTATGATATTCGTAGAGTGAAAAGCACTGAAAGTTTAGGAAATACCAGAAAATTCAACAGAGTAGATTCTGTTTCTAGTATTCTCAGGAGAATTCCTGGAAATGATCTTTGTGCGGAGTGCGGTGCTCCTGAGCCTGACTGGGCATCTCTTAATCTTGGCGTACTGATGTGCATTGAATGTTCTGGTGTTCACCGGAATCTTGGAGTACACATTTCAAAGGTGAGATCTCTAACATTAGATGTCAAGGTTTGGGAACCTATACTTGTGGACTTATTTCGCAACTTGGGTAATGCATATTGTAATTCTGTATGGGAGGGAACGCTTCTACTTGAGAATGAAAAACTGGATGGTTCGAAGGACATGAGGGCTCCAGTTTTAAAACCAGGCCCCAAGGATGCAGCTCAGCATAAGGAAATATACATTCAAGCAAAGTATGTGGAGAAAGTGATGGTTATTAGAGATGTAGCTGCATCGGGCATGCCTGTTCTTGCAGCAGATATATGGGAAGCAGTCAAGGCTGGTAATTTACAAGAAGTCTACCGCATTATCGTGATGTCAGATGTGAATATTGTCGACACCGCCTTTGAGAATGTGGTTACTCATGATTTATATCACCATGCTGAAGCAATACAGTCGGAGTCAGATTTTAACACGATGGAGATGAAACTGTATGATCCAGCAGCATGTGATAGAATCAAGGAGTCCAATGAGCCTGGGAACTGTCTTCAAGGTTGTTCATTATTGCATCTGGCTTGTCACTCTGGCAATCCGATGATGGTTGAATTGTTGCTGCAGTTTGGTGCCAACATGAATTTGCGGGATTTCCATGGAAGGACTCCTTTGCACCACTGCATCGCCAGCGGGAACAACTCATTGGCAAAGTGGCTACTTAGGAGGGGTGCACGCCCGTCAATTCAAGATGGGGGAGGGCAAAGTGCATTAGAAAGAGCGATGGAGCTGGGAGCAATTACAGACGAGGAGTTGTTCATACTACTTTCAGAACACGAGTGAAATGGAAAATTCGTCCATTATGCGGGTTTCCTCCTCACTTTCTGCTAATGCCGGAAACCTGTTTTGACTTCACTGACTTTTATCATGAACAAGAGCCAAATTCCTATGTCAGAGGAGGAGATCCGTCGAGTTTTTGTCTGTTAATCTCCGTAGGTGTCACAAGCATTTTCTTCGTCACGGGTCTTTTCATAATGTAATGTAATTTGTCTTTGAATTAAAATGTTCTTACCTCTTGGTCAGATTGGTTTATTTATGCATCTTTTAGTTATGAATTTTATTGAGATCCATTTAATATTTACATTAAAAAAAACCACACACCTACCGTTGGTACTTGGTGGAGGAGGATCACCATCTTCATTTACTTTTCATTGATTCATTTACATTTGG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G10870.1	1	AGD4\|ARF-GAP domain 4
Prunus persica	Prupe.1G344300.1.p	1	ARF-GAP domain 2
Pyrus communis	PCP005234.1	1	-
Pyrus x bretschneideri	Pbr012224.1	1	-
Rosa multiflora	Rmu_sc0002266.1_g000002.1	1	-
Rubus occidentalis	Ro04_G12526	1	-
Fragaria vesca	mrna00842.1	1	ARF-GAP domain 4
Vitis vinifera	GSVIVT01010214001	1	ARF-GAP domain 4
Nicotiana benthamiana	Niben101Scf02426g01009.1	1	"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4"
Oryza sativa	LOC_Os02g42134.2	1	"ARF GTPase-activating domain-containing protein, putative,expressed"

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	cellular component
GO:0032312	regulation of ARF GTPase activity	biological_process
GO:0005543	phospholipid binding	molecular_function
GO:0005515	protein binding	molecular_function
GO:0008060	ARF GTPase activator activity	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K12489	"Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16746.1	BAR_3	7	237	2.30E-39
PF00169.25	PH	295	424	9.60E-10
PF01412.14	ArfGap	479	605	1.20E-33

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.17521
SRR5252888	dormant buds	no	dormant buds(0 month)	13.6391
SRR5252889	dormant buds	no	dormant buds(0 month)	10.7872
SRR5252886	dormant buds	no	dormant buds(1 months)	8.76723
SRR5252887	dormant buds	no	dormant buds(1 months)	9.72457
SRR5252884	dormant buds	no	dormant buds(2 months)	10.688
SRR5252882	dormant buds	no	dormant buds(3 months)	13.0885
SRR5252883	dormant buds	no	dormant buds(3 months)	10.4869
SRR5252880	dormant buds	no	dormant buds(4 months)	16.1359
SRR5252881	dormant buds	no	dormant buds(4 months)	18.2382
SRR5252878	bud break	no	bud break	16.7783
SRR5252879	bud break	no	bud break	13.8724
SRR3744766	flower	no	mature	10.4545
SRR3744767	flower	no	mature	10.0515
SRR3744768	flower	no	mature	11.2102
SRR6308190	stigmas	no	open flowers	9.43623
SRR6308181	styles	no	open flowers	7.06475
SRR6308188	filaments	no	open flowers	6.363
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.7546
SRR6308192	pollen	no	open flowers	20.8077
SRR6308191	petals	no	open flowers	7.12334
SRR6308194	sepals	no	open flowers	6.24277
SRR6308193	receptacles	no	open flowers	5.91036
SRR6308189	ovaries	no	open flowers	6.02371
SRR3384922	fruit	no	1 week after full bloom	4.15794
SRR3384921	fruit	no	2 week after full bloom	4.62073
SRR3384920	fruit	no	3 week after full bloom	3.88369
SRR3384919	fruit	no	4 week after full bloom	5.07684
SRR3384923	fruit	no	5 week after full bloom	3.13358
SRR3384918	fruit	no	6 week after full bloom	4.23766
SRR3384917	fruit	no	8 week after full bloom	3.54402
SRR3384916	fruit	no	10 week after full bloom	3.75587
SRR3384915	fruit	no	12 week after full bloom	2.86704
SRR3384914	fruit	no	14 week after full bloom	3.89286
SRR3384913	fruit	no	16 week after full bloom	4.48689
SRR3384912	fruit	no	18 week after full bloom	4.48733
SRR3384911	fruit	no	19 week after full bloom	3.59639
SRR3384910	fruit	no	20 week after full bloom	3.94684
SRR768128	whole fruit	no	25 days post anthesis	3.27641
SRR768129	whole fruit	no	35 days post anthesis	4.40569
SRR768130	whole fruit	no	60 days post anthesis	2.21597
SRR768131	whole fruit	no	87 days post anthesis	3.75295
SRR7343308	immature fruit flesh	no	immature	5.07252
SRR7343309	immature fruit flesh	no	immature	4.07969
SRR6320494	ripe fruit flesh	no	mature	5.34905
SRR5405143	ripe fruit peel	no	mature	7.10473
SRR6320572	ripe fruit peel	no	mature	5.21459
SRR7403504	fruit	uninfected	mature	4.93245
SRR7403506	fruit	uninfected	mature	5.29182
SRR7403507	fruit	uninfected	mature	4.6012
SRR7403500	fruit	infected with penicillium expansum	mature	5.05943
SRR7403501	fruit	infected with penicillium expansum	mature	4.90685
SRR7403508	fruit	infected with penicillium expansum	mature	4.30444
SRR7403502	fruit	infected with penicillium expansum	mature	4.41531
SRR7403503	fruit	infected with penicillium expansum	mature	4.3059
SRR7403505	fruit	infected with penicillium expansum	mature	4.66444
SRR1613973	Central seeds	no	20DAPF	3.46169
SRR1613974	Central seeds	no	20DAPF	4.23182
SRR1613975	Central seeds	no	20DAPF	3.87154
SRR1613976	Lateral seeds	no	20DAPF	3.98276
SRR1613977	Lateral seeds	no	20DAPF	3.77563
SRR1613978	Lateral seeds	no	20DAPF	3.66778
SRR3744786	stem	no	mature	12.8632
SRR3744787	stem	no	mature	13.0686
SRR3744772	stem	no	mature	12.9475
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.47312
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.98323
SRR1089478	leaf	Virus-free	plantlets	5.61459
SRR1089477	leaf	ASGV-infected	plantlets	5.76543
SRR767660	leaf	uninfected	fully developed	2.76763
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	8.25316
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.76938
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.40183
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.76065
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.53242
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.29547
SRR6308182	young leaf	no	immature leaves	7.58391
SRR3744769	leaf	no	mature	16.2961
SRR3744770	leaf	no	mature	16.8049
SRR3744771	leaf	no	mature	16.4867
SRR5405145	leaf	no	mature	7.69471
SRR6320561	leaf	no	mature	6.32502