Gene detail

Detail information of MD16G1014800 Annotation

Gene ID	Annotation
MD16G1014800	zinc finger protein 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0311	voltage-dependent anion channel protein 2 voltage-gated anion channel activity arsenate reductase (glutaredoxin) activity carbonate dehydratase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1014800	mRNA	Chr16	1137645	1140861	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G336500.2.p	1	zinc finger protein 4
Prunus persica	Prupe.1G336500.3.p	1	zinc finger protein 4
Prunus persica	Prupe.1G336500.6.p	1	zinc finger protein 4
Prunus persica	Prupe.1G336500.4.p	1	zinc finger protein 4
Prunus persica	Prupe.1G336500.5.p	1	zinc finger protein 4
Prunus persica	Prupe.1G336500.1.p	1	zinc finger protein 4
Pyrus communis	PCP006777.1	1	-
Pyrus x bretschneideri	Pbr012152.1	1	-
Rubus occidentalis	Ro04_G00228	1	-
Vitis vinifera	GSVIVT01011610001	1	zinc finger protein 4
Solanum lycopersicum	Solyc01g005130.2.1	1	zinc finger protein 4
Solanum lycopersicum	Solyc01g107430.2.1	1	zinc finger protein 7
Populus trichocarpa	Potri.010G102700.1	1	zinc finger protein 4
Populus trichocarpa	Potri.008G138000.1	0.651	zinc finger protein 4
Nicotiana benthamiana	Niben101Scf00927g08001.1	1	Zinc finger protein 4
Nicotiana benthamiana	Niben101Scf00984g08003.1	1	Zinc finger protein 4
Oryza sativa	LOC_Os03g13600.1	1	"ZOS3-07 - C2H2 zinc finger protein, expressed"
Zea mays	GRMZM2G165355_P01	1	; Zinc finger protein 7 isoform 1; Zinc finger protein 7 isoform 2

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	21.7696
SRR5252888	dormant buds	no	dormant buds(0 month)	61.0184
SRR5252889	dormant buds	no	dormant buds(0 month)	74.3195
SRR5252886	dormant buds	no	dormant buds(1 months)	52.8127
SRR5252887	dormant buds	no	dormant buds(1 months)	54.8594
SRR5252884	dormant buds	no	dormant buds(2 months)	91.5708
SRR5252882	dormant buds	no	dormant buds(3 months)	112.185
SRR5252883	dormant buds	no	dormant buds(3 months)	135.968
SRR5252880	dormant buds	no	dormant buds(4 months)	131.589
SRR5252881	dormant buds	no	dormant buds(4 months)	135.702
SRR5252878	bud break	no	bud break	70.1073
SRR5252879	bud break	no	bud break	32.0363
SRR3744766	flower	no	mature	28.0334
SRR3744767	flower	no	mature	30.2269
SRR3744768	flower	no	mature	28.4935
SRR6308190	stigmas	no	open flowers	6.16847
SRR6308181	styles	no	open flowers	9.4198
SRR6308188	filaments	no	open flowers	1.39387
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.84992
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.08618
SRR6308194	sepals	no	open flowers	7.67253
SRR6308193	receptacles	no	open flowers	7.63241
SRR6308189	ovaries	no	open flowers	10.1611
SRR3384922	fruit	no	1 week after full bloom	23.2175
SRR3384921	fruit	no	2 week after full bloom	18.7504
SRR3384920	fruit	no	3 week after full bloom	6.4398
SRR3384919	fruit	no	4 week after full bloom	12.1384
SRR3384923	fruit	no	5 week after full bloom	8.31591
SRR3384918	fruit	no	6 week after full bloom	7.31286
SRR3384917	fruit	no	8 week after full bloom	6.83516
SRR3384916	fruit	no	10 week after full bloom	3.96404
SRR3384915	fruit	no	12 week after full bloom	2.57961
SRR3384914	fruit	no	14 week after full bloom	3.59358
SRR3384913	fruit	no	16 week after full bloom	4.71483
SRR3384912	fruit	no	18 week after full bloom	4.27378
SRR3384911	fruit	no	19 week after full bloom	8.87326
SRR3384910	fruit	no	20 week after full bloom	3.17169
SRR768128	whole fruit	no	25 days post anthesis	6.77203
SRR768129	whole fruit	no	35 days post anthesis	18.2919
SRR768130	whole fruit	no	60 days post anthesis	10.5579
SRR768131	whole fruit	no	87 days post anthesis	6.8117
SRR7343308	immature fruit flesh	no	immature	10.4455
SRR7343309	immature fruit flesh	no	immature	9.35271
SRR6320494	ripe fruit flesh	no	mature	8.46758
SRR5405143	ripe fruit peel	no	mature	1.79264
SRR6320572	ripe fruit peel	no	mature	1.11445
SRR7403504	fruit	uninfected	mature	9.34524
SRR7403506	fruit	uninfected	mature	9.20666
SRR7403507	fruit	uninfected	mature	9.28849
SRR7403500	fruit	infected with penicillium expansum	mature	0.0651031
SRR7403501	fruit	infected with penicillium expansum	mature	0.0966115
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0601426
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	25.1834
SRR1613974	Central seeds	no	20DAPF	23.3511
SRR1613975	Central seeds	no	20DAPF	24.1214
SRR1613976	Lateral seeds	no	20DAPF	20.6941
SRR1613977	Lateral seeds	no	20DAPF	25.7479
SRR1613978	Lateral seeds	no	20DAPF	23.3745
SRR3744786	stem	no	mature	89.5398
SRR3744787	stem	no	mature	92.4174
SRR3744772	stem	no	mature	90.5756
SRX765691	seedling shoot apex	no	4-6 week old seedling	42.1195
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.0155
SRR1089478	leaf	Virus-free	plantlets	29.0565
SRR1089477	leaf	ASGV-infected	plantlets	28.8334
SRR767660	leaf	uninfected	fully developed	22.3074
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.9446
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	17.3066
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	12.5782
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	25.5187
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	14.638
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	11.7969
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	24.2654
SRR6308182	young leaf	no	immature leaves	19.0107
SRR3744769	leaf	no	mature	66.5514
SRR3744770	leaf	no	mature	66.419
SRR3744771	leaf	no	mature	64.3937
SRR5405145	leaf	no	mature	19.0955
SRR6320561	leaf	no	mature	14.7629