Gene detail

Detail information of MD16G1015800 Annotation

Gene ID	Annotation
MD16G1015800	PLATZ transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1015800	mRNA	Chr16	1219254	1221443	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	PLATZ

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G01818.1	1	PLATZ transcription factor family protein
Prunus persica	Prupe.1G335800.1.p	1	PLATZ transcription factor family protein
Vitis vinifera	GSVIVT01011622001	1	PLATZ transcription factor family protein
Populus trichocarpa	Potri.008G137300.1	1	PLATZ transcription factor family protein
Nicotiana benthamiana	Niben101Scf09260g03025.1	1	PLATZ transcription factor family protein LENGTH=222

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.843197
SRR5252888	dormant buds	no	dormant buds(0 month)	0.392161
SRR5252889	dormant buds	no	dormant buds(0 month)	0.530013
SRR5252886	dormant buds	no	dormant buds(1 months)	1.16238
SRR5252887	dormant buds	no	dormant buds(1 months)	0.61769
SRR5252884	dormant buds	no	dormant buds(2 months)	0.281843
SRR5252882	dormant buds	no	dormant buds(3 months)	0.565347
SRR5252883	dormant buds	no	dormant buds(3 months)	1.00107
SRR5252880	dormant buds	no	dormant buds(4 months)	1.97477
SRR5252881	dormant buds	no	dormant buds(4 months)	1.25252
SRR5252878	bud break	no	bud break	3.79337
SRR5252879	bud break	no	bud break	3.27167
SRR3744766	flower	no	mature	2.20008
SRR3744767	flower	no	mature	2.81312
SRR3744768	flower	no	mature	2.46813
SRR6308190	stigmas	no	open flowers	2.23415
SRR6308181	styles	no	open flowers	3.93568
SRR6308188	filaments	no	open flowers	4.04225
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.297462
SRR6308192	pollen	no	open flowers	0.84767
SRR6308191	petals	no	open flowers	3.94435
SRR6308194	sepals	no	open flowers	3.22573
SRR6308193	receptacles	no	open flowers	3.90616
SRR6308189	ovaries	no	open flowers	4.8763
SRR3384922	fruit	no	1 week after full bloom	3.8374
SRR3384921	fruit	no	2 week after full bloom	4.44022
SRR3384920	fruit	no	3 week after full bloom	3.34215
SRR3384919	fruit	no	4 week after full bloom	2.85462
SRR3384923	fruit	no	5 week after full bloom	1.82828
SRR3384918	fruit	no	6 week after full bloom	0.801768
SRR3384917	fruit	no	8 week after full bloom	0.089042
SRR3384916	fruit	no	10 week after full bloom	0.115673
SRR3384915	fruit	no	12 week after full bloom	0.205294
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.156343
SRR3384912	fruit	no	18 week after full bloom	0.293439
SRR3384911	fruit	no	19 week after full bloom	0.0703606
SRR3384910	fruit	no	20 week after full bloom	0.330542
SRR768128	whole fruit	no	25 days post anthesis	3.02272
SRR768129	whole fruit	no	35 days post anthesis	4.89175
SRR768130	whole fruit	no	60 days post anthesis	0.29291
SRR768131	whole fruit	no	87 days post anthesis	0.220476
SRR7343308	immature fruit flesh	no	immature	1.56416
SRR7343309	immature fruit flesh	no	immature	1.95166
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.11012
SRR7403506	fruit	uninfected	mature	0.0387752
SRR7403507	fruit	uninfected	mature	0.092078
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.156935
SRR7403503	fruit	infected with penicillium expansum	mature	0.350567
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.216783
SRR1613974	Central seeds	no	20DAPF	0.230172
SRR1613975	Central seeds	no	20DAPF	0.0919102
SRR1613976	Lateral seeds	no	20DAPF	0.116013
SRR1613977	Lateral seeds	no	20DAPF	0.179491
SRR1613978	Lateral seeds	no	20DAPF	0.257612
SRR3744786	stem	no	mature	2.6002
SRR3744787	stem	no	mature	2.39161
SRR3744772	stem	no	mature	1.90221
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.7438
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.96704
SRR1089478	leaf	Virus-free	plantlets	0.126935
SRR1089477	leaf	ASGV-infected	plantlets	0.196924
SRR767660	leaf	uninfected	fully developed	0.772312
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.835837
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.33799
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.820679
SRR6308182	young leaf	no	immature leaves	1.44002
SRR3744769	leaf	no	mature	1.49924
SRR3744770	leaf	no	mature	2.33896
SRR3744771	leaf	no	mature	1.55849
SRR5405145	leaf	no	mature	0.452483
SRR6320561	leaf	no	mature	1.49467