Gene detail

Detail information of MD16G1047700 Annotation

Gene ID	Annotation
MD16G1047700	AP2/B3 transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0404

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1047700	mRNA	Chr16	3329564	3330772	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	RAV

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G25560.1	1	AtTEM1;EDF1;TEM1\|ETHYLENE RESPONSE DNA BINDING FACTOR 1;TEMPRANILLO 1
Prunus persica	Prupe.1G305900.1.p	1	AP2/B3 transcription factor family protein
Pyrus communis	PCP001822.1	1	-
Pyrus x bretschneideri	Pbr013255.1	1	-
Rosa multiflora	Rmu_ssc0000471.1_g000001.1	1	-
Rubus occidentalis	Ro04_G02635	1	-
Fragaria vesca	mrna03871.1	1	AP2/B3 transcription factor family protein
Vitis vinifera	GSVIVT01036447001	1	related to ABI3/VP1 1
Populus trichocarpa	Potri.008G117100.1	1	AP2/B3 transcription factor family protein
Populus trichocarpa	Potri.010G129200.1	0.621	AP2/B3 transcription factor family protein
Nicotiana benthamiana	Niben101Scf03150g06002.1	1	Ethylene-responsive transcription factor 4
Oryza sativa	LOC_Os01g49830.1	1	"B3 DNA binding domain containing protein, expressed"
Oryza sativa	LOC_Os05g47650.1	1	"B3 DNA binding domain containing protein, expressed"
Zea mays	GRMZM2G169654_P01	1	DNA-binding protein RAV1

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K09287	RAV-like factor	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	77	125	7.80E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.02456
SRR5252888	dormant buds	no	dormant buds(0 month)	55.6234
SRR5252889	dormant buds	no	dormant buds(0 month)	39.1775
SRR5252886	dormant buds	no	dormant buds(1 months)	74.8038
SRR5252887	dormant buds	no	dormant buds(1 months)	120.054
SRR5252884	dormant buds	no	dormant buds(2 months)	83.79
SRR5252882	dormant buds	no	dormant buds(3 months)	82.2727
SRR5252883	dormant buds	no	dormant buds(3 months)	252.96
SRR5252880	dormant buds	no	dormant buds(4 months)	16.6458
SRR5252881	dormant buds	no	dormant buds(4 months)	25.5824
SRR5252878	bud break	no	bud break	15.7826
SRR5252879	bud break	no	bud break	18.6503
SRR3744766	flower	no	mature	34.6004
SRR3744767	flower	no	mature	33.8098
SRR3744768	flower	no	mature	36.5438
SRR6308190	stigmas	no	open flowers	2.27481
SRR6308181	styles	no	open flowers	0.976906
SRR6308188	filaments	no	open flowers	0.980317
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0.959651
SRR6308191	petals	no	open flowers	24.3978
SRR6308194	sepals	no	open flowers	7.70285
SRR6308193	receptacles	no	open flowers	1.50864
SRR6308189	ovaries	no	open flowers	1.7506
SRR3384922	fruit	no	1 week after full bloom	29.6555
SRR3384921	fruit	no	2 week after full bloom	11.5398
SRR3384920	fruit	no	3 week after full bloom	19.2487
SRR3384919	fruit	no	4 week after full bloom	8.26345
SRR3384923	fruit	no	5 week after full bloom	2.51471
SRR3384918	fruit	no	6 week after full bloom	2.09954
SRR3384917	fruit	no	8 week after full bloom	5.35512
SRR3384916	fruit	no	10 week after full bloom	4.59408
SRR3384915	fruit	no	12 week after full bloom	3.49435
SRR3384914	fruit	no	14 week after full bloom	3.53965
SRR3384913	fruit	no	16 week after full bloom	1.33057
SRR3384912	fruit	no	18 week after full bloom	1.41516
SRR3384911	fruit	no	19 week after full bloom	3.11381
SRR3384910	fruit	no	20 week after full bloom	3.6883
SRR768128	whole fruit	no	25 days post anthesis	2.61572
SRR768129	whole fruit	no	35 days post anthesis	1.08955
SRR768130	whole fruit	no	60 days post anthesis	1.9928
SRR768131	whole fruit	no	87 days post anthesis	0.125
SRR7343308	immature fruit flesh	no	immature	34.6209
SRR7343309	immature fruit flesh	no	immature	38.1106
SRR6320494	ripe fruit flesh	no	mature	3.3814
SRR5405143	ripe fruit peel	no	mature	1.49036
SRR6320572	ripe fruit peel	no	mature	5.10497
SRR7403504	fruit	uninfected	mature	5.57851
SRR7403506	fruit	uninfected	mature	5.23323
SRR7403507	fruit	uninfected	mature	5.11707
SRR7403500	fruit	infected with penicillium expansum	mature	1.18356
SRR7403501	fruit	infected with penicillium expansum	mature	1.27737
SRR7403508	fruit	infected with penicillium expansum	mature	0.575528
SRR7403502	fruit	infected with penicillium expansum	mature	4.62765
SRR7403503	fruit	infected with penicillium expansum	mature	2.98195
SRR7403505	fruit	infected with penicillium expansum	mature	5.18214
SRR1613973	Central seeds	no	20DAPF	0.804066
SRR1613974	Central seeds	no	20DAPF	1.25827
SRR1613975	Central seeds	no	20DAPF	1.41664
SRR1613976	Lateral seeds	no	20DAPF	1.64352
SRR1613977	Lateral seeds	no	20DAPF	1.16968
SRR1613978	Lateral seeds	no	20DAPF	1.16784
SRR3744786	stem	no	mature	401.486
SRR3744787	stem	no	mature	395.542
SRR3744772	stem	no	mature	400.687
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.316
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.21819
SRR1089478	leaf	Virus-free	plantlets	22.5855
SRR1089477	leaf	ASGV-infected	plantlets	40.6181
SRR767660	leaf	uninfected	fully developed	17.5022
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.557
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.7136
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	62.1858
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	61.157
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	44.1937
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	100.623
SRR6308182	young leaf	no	immature leaves	0.723822
SRR3744769	leaf	no	mature	118.371
SRR3744770	leaf	no	mature	119.798
SRR3744771	leaf	no	mature	117.985
SRR5405145	leaf	no	mature	75.1826
SRR6320561	leaf	no	mature	69.0026