Gene detail

Detail information of MD16G1066400 Annotation

Gene ID	Annotation
MD16G1066400	eukaryotic elongation factor 5A-1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1066400	mRNA	Chr16	4634223	4636535	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G13950.1	1	ATELF5A-1;EIF5A;EIF-5A;ELF5A-1\|EUKARYOTIC ELONGATION FACTOR 5A-1;;EUKARYOTIC ELONGATION FACTOR 5A
Pyrus communis	PCP003367.1	1	-
Populus trichocarpa	Potri.006G185000.1	1	eukaryotic elongation factor 5A-1
Populus trichocarpa	Potri.018G107300.2	1	eukaryotic elongation factor 5A-1
Nicotiana benthamiana	Niben101Scf08588g00016.1	1	Eukaryotic translation initiation factor 5A-2
Oryza sativa	LOC_Os12g32240.1	1	"eukaryotic translation initiation factor 5A, putative, expressed"
Oryza sativa	LOC_Os07g02210.3	1	"eukaryotic translation initiation factor 5A, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0045905	positive regulation of translational termination	biological_process
GO:0045901	positive regulation of translational elongation	biological_process
GO:0006452	translational frameshifting	biological_process
GO:0043022	ribosome binding	molecular_function
GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	biological_process
GO:0003746	translation elongation factor activity	molecular_function

KEGG

KO	Description	Enzyme
K03263	translation initiation factor 5A	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01287.16	eIF-5a	85	154	5.70E-30

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	84.0045
SRR5252888	dormant buds	no	dormant buds(0 month)	32.7043
SRR5252889	dormant buds	no	dormant buds(0 month)	43.8914
SRR5252886	dormant buds	no	dormant buds(1 months)	27.1151
SRR5252887	dormant buds	no	dormant buds(1 months)	32.3174
SRR5252884	dormant buds	no	dormant buds(2 months)	15.286
SRR5252882	dormant buds	no	dormant buds(3 months)	16.3202
SRR5252883	dormant buds	no	dormant buds(3 months)	32.244
SRR5252880	dormant buds	no	dormant buds(4 months)	18.4264
SRR5252881	dormant buds	no	dormant buds(4 months)	26.6614
SRR5252878	bud break	no	bud break	47.0302
SRR5252879	bud break	no	bud break	45.6098
SRR3744766	flower	no	mature	50.2935
SRR3744767	flower	no	mature	49.2047
SRR3744768	flower	no	mature	51.3509
SRR6308190	stigmas	no	open flowers	51.1465
SRR6308181	styles	no	open flowers	64.5484
SRR6308188	filaments	no	open flowers	100.705
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	83.9512
SRR6308192	pollen	no	open flowers	397.315
SRR6308191	petals	no	open flowers	65.4413
SRR6308194	sepals	no	open flowers	60.6578
SRR6308193	receptacles	no	open flowers	69.8412
SRR6308189	ovaries	no	open flowers	63.4698
SRR3384922	fruit	no	1 week after full bloom	84.6581
SRR3384921	fruit	no	2 week after full bloom	101.578
SRR3384920	fruit	no	3 week after full bloom	201.389
SRR3384919	fruit	no	4 week after full bloom	186.258
SRR3384923	fruit	no	5 week after full bloom	193.479
SRR3384918	fruit	no	6 week after full bloom	202.002
SRR3384917	fruit	no	8 week after full bloom	246.875
SRR3384916	fruit	no	10 week after full bloom	248.325
SRR3384915	fruit	no	12 week after full bloom	329.495
SRR3384914	fruit	no	14 week after full bloom	240.911
SRR3384913	fruit	no	16 week after full bloom	201.964
SRR3384912	fruit	no	18 week after full bloom	216.572
SRR3384911	fruit	no	19 week after full bloom	187.529
SRR3384910	fruit	no	20 week after full bloom	192.967
SRR768128	whole fruit	no	25 days post anthesis	113.556
SRR768129	whole fruit	no	35 days post anthesis	127.246
SRR768130	whole fruit	no	60 days post anthesis	196.443
SRR768131	whole fruit	no	87 days post anthesis	144.91
SRR7343308	immature fruit flesh	no	immature	131.864
SRR7343309	immature fruit flesh	no	immature	169.926
SRR6320494	ripe fruit flesh	no	mature	107.71
SRR5405143	ripe fruit peel	no	mature	179.037
SRR6320572	ripe fruit peel	no	mature	219.459
SRR7403504	fruit	uninfected	mature	131.656
SRR7403506	fruit	uninfected	mature	121.448
SRR7403507	fruit	uninfected	mature	115.595
SRR7403500	fruit	infected with penicillium expansum	mature	123.524
SRR7403501	fruit	infected with penicillium expansum	mature	134.239
SRR7403508	fruit	infected with penicillium expansum	mature	125.756
SRR7403502	fruit	infected with penicillium expansum	mature	132.442
SRR7403503	fruit	infected with penicillium expansum	mature	117.892
SRR7403505	fruit	infected with penicillium expansum	mature	113.317
SRR1613973	Central seeds	no	20DAPF	29.6307
SRR1613974	Central seeds	no	20DAPF	27.0586
SRR1613975	Central seeds	no	20DAPF	31.0631
SRR1613976	Lateral seeds	no	20DAPF	31.7173
SRR1613977	Lateral seeds	no	20DAPF	31.5518
SRR1613978	Lateral seeds	no	20DAPF	31.7621
SRR3744786	stem	no	mature	59.4916
SRR3744787	stem	no	mature	66.4812
SRR3744772	stem	no	mature	61.1397
SRX765691	seedling shoot apex	no	4-6 week old seedling	97.838
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	170.008
SRR1089478	leaf	Virus-free	plantlets	79.0879
SRR1089477	leaf	ASGV-infected	plantlets	72.8145
SRR767660	leaf	uninfected	fully developed	68.791
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	22.0513
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	43.3872
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	243.984
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	82.3206
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	94.1466
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	60.5295
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	61.9238
SRR6308182	young leaf	no	immature leaves	68.2105
SRR3744769	leaf	no	mature	37.0393
SRR3744770	leaf	no	mature	37.7406
SRR3744771	leaf	no	mature	41.0304
SRR5405145	leaf	no	mature	55.3823
SRR6320561	leaf	no	mature	61.0388