Gene detail

Detail information of MD16G1067700 Annotation

Gene ID	Annotation
MD16G1067700	emp24/gp25L/p24 family/GOLD family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1067700	mRNA	Chr16	4758133	4759968	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G279100.1.p	1	emp24/gp25L/p24 family/GOLD family protein
Pyrus communis	PCP044871.1	1	-
Vitis vinifera	GSVIVT01003215001	1	emp24/gp25L/p24 family/GOLD family protein
Oryza sativa	LOC_Os03g25930.1	1	"emp24/gp25L/p24 family protein, putative, expressed"
Zea mays	GRMZM2G021129_P01	1	Transmembrane emp24 domain-containing protein 10;

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0006810	transport	biological_process

KEGG

KO	Description	Enzyme
K20352	p24 family protein delta-1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01105.20	EMP24_GP25L	83	268	4.20E-51

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	17.3302
SRR5252888	dormant buds	no	dormant buds(0 month)	7.0324
SRR5252889	dormant buds	no	dormant buds(0 month)	6.83917
SRR5252886	dormant buds	no	dormant buds(1 months)	6.39666
SRR5252887	dormant buds	no	dormant buds(1 months)	7.15003
SRR5252884	dormant buds	no	dormant buds(2 months)	6.73885
SRR5252882	dormant buds	no	dormant buds(3 months)	6.00774
SRR5252883	dormant buds	no	dormant buds(3 months)	8.38764
SRR5252880	dormant buds	no	dormant buds(4 months)	7.86944
SRR5252881	dormant buds	no	dormant buds(4 months)	9.35866
SRR5252878	bud break	no	bud break	7.65157
SRR5252879	bud break	no	bud break	11.2785
SRR3744766	flower	no	mature	16.293
SRR3744767	flower	no	mature	17.7977
SRR3744768	flower	no	mature	18.059
SRR6308190	stigmas	no	open flowers	32.5563
SRR6308181	styles	no	open flowers	23.0114
SRR6308188	filaments	no	open flowers	19.8174
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	19.5918
SRR6308192	pollen	no	open flowers	77.2602
SRR6308191	petals	no	open flowers	14.2961
SRR6308194	sepals	no	open flowers	14.1735
SRR6308193	receptacles	no	open flowers	14.9429
SRR6308189	ovaries	no	open flowers	18.2524
SRR3384922	fruit	no	1 week after full bloom	25.0493
SRR3384921	fruit	no	2 week after full bloom	23.2137
SRR3384920	fruit	no	3 week after full bloom	18.6809
SRR3384919	fruit	no	4 week after full bloom	13.4662
SRR3384923	fruit	no	5 week after full bloom	17.7374
SRR3384918	fruit	no	6 week after full bloom	15.4849
SRR3384917	fruit	no	8 week after full bloom	19.1625
SRR3384916	fruit	no	10 week after full bloom	19.6691
SRR3384915	fruit	no	12 week after full bloom	25.8176
SRR3384914	fruit	no	14 week after full bloom	15.7819
SRR3384913	fruit	no	16 week after full bloom	15.9923
SRR3384912	fruit	no	18 week after full bloom	19.0035
SRR3384911	fruit	no	19 week after full bloom	19.5352
SRR3384910	fruit	no	20 week after full bloom	23.4922
SRR768128	whole fruit	no	25 days post anthesis	27.0034
SRR768129	whole fruit	no	35 days post anthesis	15.6377
SRR768130	whole fruit	no	60 days post anthesis	12.4293
SRR768131	whole fruit	no	87 days post anthesis	6.72439
SRR7343308	immature fruit flesh	no	immature	11.4364
SRR7343309	immature fruit flesh	no	immature	14.0173
SRR6320494	ripe fruit flesh	no	mature	20.2436
SRR5405143	ripe fruit peel	no	mature	11.9446
SRR6320572	ripe fruit peel	no	mature	23.359
SRR7403504	fruit	uninfected	mature	13.7334
SRR7403506	fruit	uninfected	mature	14.353
SRR7403507	fruit	uninfected	mature	16.492
SRR7403500	fruit	infected with penicillium expansum	mature	38.2637
SRR7403501	fruit	infected with penicillium expansum	mature	35.8626
SRR7403508	fruit	infected with penicillium expansum	mature	36.8945
SRR7403502	fruit	infected with penicillium expansum	mature	31.6479
SRR7403503	fruit	infected with penicillium expansum	mature	31.6273
SRR7403505	fruit	infected with penicillium expansum	mature	27.6975
SRR1613973	Central seeds	no	20DAPF	28.6849
SRR1613974	Central seeds	no	20DAPF	25.2123
SRR1613975	Central seeds	no	20DAPF	29.4823
SRR1613976	Lateral seeds	no	20DAPF	27.8105
SRR1613977	Lateral seeds	no	20DAPF	33.4146
SRR1613978	Lateral seeds	no	20DAPF	30.0015
SRR3744786	stem	no	mature	15.618
SRR3744787	stem	no	mature	15.5043
SRR3744772	stem	no	mature	14.775
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.5968
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	23.341
SRR1089478	leaf	Virus-free	plantlets	8.5735
SRR1089477	leaf	ASGV-infected	plantlets	7.17197
SRR767660	leaf	uninfected	fully developed	11.7572
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	27.667
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.4111
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	13.2102
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	23.3669
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	18.9989
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.6892
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	18.6886
SRR6308182	young leaf	no	immature leaves	16.8666
SRR3744769	leaf	no	mature	18.1788
SRR3744770	leaf	no	mature	16.4953
SRR3744771	leaf	no	mature	17.1076
SRR5405145	leaf	no	mature	15.9093
SRR6320561	leaf	no	mature	12.0662