Gene detail

Detail information of MD16G1075900 Annotation

Gene ID	Annotation
MD16G1075900	sucrose transporter 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0523	intra-Golgi vesicle-mediated transport positive regulation of calcium ion transport protein import into peroxisome matrix lithium ion transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1075900	mRNA	Chr16	5310417	5316206	+

Sequences

CDS:

MD16G1075900

GCGGGCCCATAAAACTGATAAACCGAAAGCGGGAGCCGAAGTAGGAGTCCTCATGGTGCTGCGGTGTACGCTAAATCGGCAACAGAAATGCGATCAGACTCTTCGCACGCACGCACACCCGCCCAAAATTTGATCCACCTGCAAAACTCTGCTCACGCGCTAATGAATCCTTCGCAGTTCTGACGCCGAAATCCGATCTACATGCAAAAACCTAGATCCGCACCGTTTTTGCCGGTTAATGCGCGGGAGATTGAGCTTCTGAGTCGCGGCCATTACTGAGTCAGTGAAACCGAGTCGCCATGGCGGGGAGGACGGACTCGGAGTCCATCCGGGTGCCGTACAGGAACCTGAGGAGGGATGCGGAAGTGGAAATGATGGTGACGGACGAGCCTCATCATCGTATCGACCTCAATTCGCCTACGTCTTCCTCCCCTAGGGTTCCAAATGGGAGCGGCGGCGGCCTCTCGCCGCCGGGACAGCCCGGACACAAACACCATACTCTTTTGACGCTCATTCTCAGCTGCACGGTCGCCGCCGGTGTGCAGTTCGGTTGGGCGTTGCAGCTTTCGCTTTTAACTCCTTATATACAGACTCTCGGAATAGGGCATGCCTTTTCTTCATTTATTTGGCTTTGTGGCCCTATTACAGGCCTTGTGGTTCAACCTTGTGTTGGTATTTGGAGTGACAAATGCTCTTTAAAATTGGGAAGAAGACGCCCCTTCATTCTTGCAGGATCTCTCATGATTTCTGTTTCCGTGGTGTTAATCGGGTTTTCTGCAGACGTTGGATACTTATTAGGAGATACAAAGGAGCATTGCAGCACATTCAAAGGTACCCGGACAAGGGCAGCCTTTGTCTTTATTATTGGATTTTGGTTGCTGGATCTTGCCAACAATACAGTGCAGGGACCAGCTCGTGCTCTTCTGGCTGATCTAGCAGGCCCCGAGCAACGTAATACTGCAAATGCCGTGTTTTGCTCATGGATGGCCGTTGGTAACATACTAGGATTTTCTGCTGGTGCAAGTGGAAATTGGCACAGATGGTTTCCTTTCCTTTTGAGTAGAGCTTGCTGTGAAGCCTGTGGAAATCTTAAAGCAGCATTTCTTATTGCGGTGATCTTTCTCACTTTGTGTACACTGGTTACAATGTATTTTGCTGAGGAGGTTCCGCTCACTGCGTATCAGCCGAACCCTTTATCAGATTCTGCTCCTTTATTGGATGATCCCCAACAACATGGTCTTGAGCTTTCTAAGTTGAAGCGTGATAAGCAAGTTATTGATAATGCAAATGGAAGCAGAACTGACTATGAAAGGGATATAAATCTGAAGGAGGCCATCTCAAAAGTTGAGGAAGATAAGAATGGTGGTTTTAATGACGGACCTGGAGCAGTGTTAGTCAATCTGTTGACCAGTTTAAGGCATTTACCACCAGCAATGCATTCAGTGCTAATTGTTATGGCTCTTACATGGTTATCCTGGTTTCCATTCTTTCTTTTTGATACGGATTGGATGGGTAGGGAAGTATATCATGGGGATCCGAAAGGGAACTCGGCCAAAGTACAAGCTTATGATCAGGGTGTCAGAGAAGGTGCATTCGGTTTATTATTGAATTCAGTTGTTCTTGGCATCAGTTCTTTCCTAATTGAGCCAATGTGCCAGCGGATGGGTGCAAGACTAGTGTGGGCAATGAGCAATTTTATTGTGTTTGCCTGCATGGCAGGCACCGCTATCATAAGTTTAATATCTGTTACAGAGTATTCTAAAGGGATTGAACATGTAATTGGGGGGAATGAAAATATCAGGATTGCTTCCCTGATTGTTTTTGCTCTTCTTGGCTTCCCACTTGCTATTACCTACAGTGTTCCCTTTTCCGTTACAGCAGAGTTGACTGCCGACGCAGGTGGTGGCCAAGGACTGGCTATCGGAGTTTTGAATCTTGCAATTGTTATTCCACAGATGATTGTGTCTCTTGGTGCGGGGCCATGGGATGCTTTATTTGGGGGAGGAAATATACCTGCCTTTGTTTTGGCCTCCTTCGCTGCCCTTGCTGGTGGCATTATCGCGGCTCGCAGACTACCAATTCTTTCGAGTTCCCTCAAGTCAACCGGTTTTCATTTTGGGTAATTACAAAAGCAGTTCACCTGGTCGGCTAATGACCGAAGCAACTCATCGGATGATGCCCACCCCGTATTCGATTCAACCATACAGGAGCATTTGCTCTCCAAGGGATTGCTCTGGCTCTGGCTCTAGAATACGCGTACGTATCACACTTACCAACACCCATTCCATAAATTCATTCTTTTTTTTTGCCTCACTTCGTATGTAGAGTGTATATTGTCAGTTACATGAAAAGGATATACATACATGCATATAATGCTAATGCCGCTCTAAGAAAATTGTTCATTTCTTCCCCATCCGGTTAACATTTTACAATTGTGTATATAATTTCATAAGACTTTTATGTTGTGGCCGGGTTCCGGCTAGCCTGATCTTAATATGGCCGGTGGCTGCCACTACTTTCCCGTTGCCGGTACCCAAATTTGATGGAAGTAAACGTTAAGTCGGATTAATGTAGATGATAATATACAATCAAGAGAAGGAAATAAATGAGTTTATATGATGTTGATGGAGGTTAA

Protein:

Gene family

Gene family	Subfamily
Transporter family	GPH

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G02860.1	1	ATSUC3;ATSUT2;SUC3;SUT2\|ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3;;SUCROSE TRANSPORTER 3;sucrose transporter 2
Prunus persica	Prupe.1G271500.1.p	1	sucrose transporter 2
Pyrus communis	PCP013973.1	1	-
Rosa multiflora	Rmu_sc0001685.1_g000018.1	1	-
Rubus occidentalis	Ro04_G00094	1	-
Vitis vinifera	GSVIVT01020031001	1	sucrose transporter 2
Populus trichocarpa	Potri.008G148100.1	1	sucrose transporter 2
Nicotiana benthamiana	Niben101Scf04285g03020.1	1	sucrose transporter 2 LENGTH=594
Oryza sativa	LOC_Os10g26470.1	1	"sucrose transporter, putativ, expressed"
Oryza sativa	LOC_Os02g36700.1	1	"sucrose transporter BoSUT1, putative, expressed"
Oryza sativa	LOC_Os02g58080.1	1	"transporter, major facilitator family, putative, expressed"
Zea mays	GRMZM2G145107_P01	1	Sucrose transporter 2;

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0055085	transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.79111
SRR5252888	dormant buds	no	dormant buds(0 month)	8.13717
SRR5252889	dormant buds	no	dormant buds(0 month)	8.29671
SRR5252886	dormant buds	no	dormant buds(1 months)	8.36224
SRR5252887	dormant buds	no	dormant buds(1 months)	8.64055
SRR5252884	dormant buds	no	dormant buds(2 months)	7.29373
SRR5252882	dormant buds	no	dormant buds(3 months)	5.60175
SRR5252883	dormant buds	no	dormant buds(3 months)	7.21715
SRR5252880	dormant buds	no	dormant buds(4 months)	6.97179
SRR5252881	dormant buds	no	dormant buds(4 months)	5.47528
SRR5252878	bud break	no	bud break	7.73023
SRR5252879	bud break	no	bud break	6.35635
SRR3744766	flower	no	mature	10.1986
SRR3744767	flower	no	mature	11.2733
SRR3744768	flower	no	mature	10.8993
SRR6308190	stigmas	no	open flowers	8.38089
SRR6308181	styles	no	open flowers	6.49016
SRR6308188	filaments	no	open flowers	7.07403
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.8122
SRR6308192	pollen	no	open flowers	27.9221
SRR6308191	petals	no	open flowers	6.17107
SRR6308194	sepals	no	open flowers	5.86712
SRR6308193	receptacles	no	open flowers	3.50968
SRR6308189	ovaries	no	open flowers	5.74373
SRR3384922	fruit	no	1 week after full bloom	4.31844
SRR3384921	fruit	no	2 week after full bloom	4.30717
SRR3384920	fruit	no	3 week after full bloom	3.41034
SRR3384919	fruit	no	4 week after full bloom	5.18771
SRR3384923	fruit	no	5 week after full bloom	3.90029
SRR3384918	fruit	no	6 week after full bloom	6.64212
SRR3384917	fruit	no	8 week after full bloom	4.40039
SRR3384916	fruit	no	10 week after full bloom	7.06469
SRR3384915	fruit	no	12 week after full bloom	7.24222
SRR3384914	fruit	no	14 week after full bloom	6.09565
SRR3384913	fruit	no	16 week after full bloom	5.90408
SRR3384912	fruit	no	18 week after full bloom	9.74748
SRR3384911	fruit	no	19 week after full bloom	5.83901
SRR3384910	fruit	no	20 week after full bloom	9.50315
SRR768128	whole fruit	no	25 days post anthesis	2.52919
SRR768129	whole fruit	no	35 days post anthesis	4.08444
SRR768130	whole fruit	no	60 days post anthesis	6.3686
SRR768131	whole fruit	no	87 days post anthesis	6.70087
SRR7343308	immature fruit flesh	no	immature	2.18524
SRR7343309	immature fruit flesh	no	immature	3.63249
SRR6320494	ripe fruit flesh	no	mature	6.64907
SRR5405143	ripe fruit peel	no	mature	10.6476
SRR6320572	ripe fruit peel	no	mature	7.16794
SRR7403504	fruit	uninfected	mature	6.67105
SRR7403506	fruit	uninfected	mature	6.53975
SRR7403507	fruit	uninfected	mature	6.75391
SRR7403500	fruit	infected with penicillium expansum	mature	20.2999
SRR7403501	fruit	infected with penicillium expansum	mature	17.2329
SRR7403508	fruit	infected with penicillium expansum	mature	20.2941
SRR7403502	fruit	infected with penicillium expansum	mature	17.34
SRR7403503	fruit	infected with penicillium expansum	mature	16.5831
SRR7403505	fruit	infected with penicillium expansum	mature	17.1881
SRR1613973	Central seeds	no	20DAPF	3.38875
SRR1613974	Central seeds	no	20DAPF	3.22896
SRR1613975	Central seeds	no	20DAPF	3.0058
SRR1613976	Lateral seeds	no	20DAPF	2.98959
SRR1613977	Lateral seeds	no	20DAPF	2.63331
SRR1613978	Lateral seeds	no	20DAPF	2.58298
SRR3744786	stem	no	mature	5.31631
SRR3744787	stem	no	mature	5.49355
SRR3744772	stem	no	mature	6.13123
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.98478
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.30093
SRR1089478	leaf	Virus-free	plantlets	3.68756
SRR1089477	leaf	ASGV-infected	plantlets	3.59858
SRR767660	leaf	uninfected	fully developed	3.25928
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.37381
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.01628
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.28243
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.20637
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.92395
SRR6308182	young leaf	no	immature leaves	3.66653
SRR3744769	leaf	no	mature	8.06138
SRR3744770	leaf	no	mature	7.52135
SRR3744771	leaf	no	mature	7.90318
SRR5405145	leaf	no	mature	5.2846
SRR6320561	leaf	no	mature	6.25126