Gene detail

Detail information of MD16G1105900 Annotation

Gene ID	Annotation
MD16G1105900	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0310	RIO kinase 2 [EC:2.7.11.1] 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] protein import into nucleus nucleolus

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1105900	mRNA	Chr16	7432308	7437196	+

Sequences

CDS:

MD16G1105900

TTTTGCCGTCTTCTCCTAACACTAAACCCCCCAAAATGAATCCTCGCCGCGCCAGCATTGGAATGTCGCCGGAGGCACTCTCGGCGTCGGGTCGGGGCTCCGAGAAGATGAGCTTGCCCGCGCTTCAGTCGAAGATGAAGTGCGACCCGGAAGGGTACTTGCAGGAGCTCCAGCTGGTGTATAACCAATTCAAGTCCGCCGTGGATCTCTTCGAAAAACAATTAGAGATGGGGTTCACGTCCGTCAGCGGCGTCGGCAACGACCCGGCCGTCGCGAAGGACCTTGGCGACCGGGCGATGTTCTTGGCTCACGTCACCCCCTTTTACCCGACCCAGATGGCCCATTTCCCCGTCGAGCTCTCCCAGTTTCTCTGCTCCACCGCCCGAAAACTCCCCTCGGGGCTCCGGCTGCATGTCACCCAAGCTCTCATTCTTCTCATGAATCGAAAGATGGTTGATTTGGGAGACACTATAGCCATGTTCATGGAGCTGCAGACGTATGGGGATAAGCCTTTGAGAAAGCTGGCATTTTCTCATGTGGTTCATAGCATAAAGCGAATGAATCAGAAGCATAAGAACGAAGCAAAGAATCGGGCACTTCAAAATGTTGTTTTTGAGATGCTACGGCAAGAGGATGAAACAAAAGCAAAGAGGGCGCTTATCACGCTACGAGAGCTTCACCAGAGAAAGCAGTGGTTTGATGAAAGAACAGCAAATGCGATTTGTATTGCGTGCTTTCATCCATCTTCAAGGATAATGATTGCTTGCCTCTCATTTCTGCTTGATTACGAGAAGTTTGAAGATGGTGATAGTGATGCATCAAGTAGCGAAGATGAAGGTCCTCACACATCTCAAGTAGTCCTTAATAGAGAGTCTATTTATAAGGCACACCATCAAGGTACAATTGCTAGCAAAAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATGCGTAGTATGAAAAAACAGCAGCGCCTATCATCAGAAAAAACTAATTCAAATTATCATACGCCACTTAACCATTTGCAAGATCCACAGGGATTTGCTGAGAAACTATTCTCCCGCCTTCAAACCTGCAATGAACGATTTGAGGTCAAGATGATGATGTTGAAAGTAATTGCCCGCACGATTGGGCTTCACCGCTTGATTTTGTTGAACTTTTATCCTTTCCTTCAGAAATATATTCAGCCTCACCAACGCAATGTCACAAGTTTACTTGCTGCAGCAGTTCAGGCTTGCCATGATATGGTTCCTCCTGATGCCGTTCAACCACTGTTCAAACAACTAGTGAATCAATTTGTACATGATCGCTCACGTCCAGAGGCCATAGCTGTTGGACTGAATGTAACAAGGGAGTTATGTTTACGGATTCCATTGTTGATGACCGAAGAGTTGCTGCAAGATCTTGCATTATATAAGAAATCACATGAGAAAGCAGTTTCAATAGCAGCGCGCTCACTTATCAGTTTATTCAGAGAGATTTGCCCCTCACTGTTGATTAAGAAGGACCGTGGACGCCCCACTAACCCCAAGGCAAAACCAAAAGCTTATGGAGAAGTCAGTGTACTCAGCAATGTTCCTGGTGTTGAACTGCTAGAAGAAGATGATGGCAATGAGGACAGTGATGATGCTGATGAACATTCATTCAGCGGCACTGATGATGATGATAAAGATAATGATCTTGATCTTGATCGCGATGAGATGGTTGCTTTCAGTGATGATGATGACAACCATATGGACAACAGTGACAGTGGAAGCGAAGATGATGGAATAGAAGAGGATGCCGTGGTAGCTGAAGATGAAGATGGTGATGATAGTATAGATGATAATGACAGTGATGTCAATGGGAGTGAGGATGAGGATGACGATGAAGATGAGGAAGAAGAAGAGAATGAGGAGGAAGAATCTGACAACGATGATGCCAAAGGTAGTGGACATGGAGTAAAAGACAACAAAGCAAAAAAGAGGAAGTTTGCCGATTTTGATAAACAACTTAATCATGCTGAATCAAGTCTTCGGGCTTTGAAGAGATTGGCCAAAGAGAATATGGAGCCTGCTTCACTGGACTCAGCTGATGGTTTTCTTTCTAATGAGGACTTCCAGAGGATTAAGGAGTTAAAGGCAAAGAAGGAAGCCCAAATTGCTTTGACTCGGCAGGGATTATTGAAGAAGGGCGCAGACGCCAAGTCACCCGCATTCAAGATTCCCAGCTCATCTGAAATGAGCAGTAAGCGAGTAGATCCTGCAAAGCTTGAAGTCCACGTAAAGAAAAGGATGAGCAAGGAGGAGAGATTGGCATTAGTGAGAGCAGGGCGGGAGGAGAGAGGGAAGTACCAGGCTCGAGCCGCCATAAAACAGAAGAAGACGGGAGGTATGAGCAACAAGCAGAAGGAGCACAAAAAGCAAATGCCTATGGCTGCAAAGAGGGCAAAGGTTGCTAAATCTCGCGTGGATAAAAGGAAGCAGCAGCAGCGATCTGGCAAACAATTCCGAGGGAAGAAGGCATGGAAATGAGGAGCGTTATCAAATTTTCTTCCCGTTTTCCCCTTTGTGTTTTTTACCTGAATGAAGAGAGTCCATGGGATGCCATTTTTGTAGTTGGCAACGTGTGATTACTCGTAAAAATGTTTAATGACATGTTACCGGAATGTGTTTGACCATAAATATTTCGTAATATTTAAAGATTTTGGCACTTCGCAGCGGTTTAAACACACAATCTTATGTGCAAGAGTAAACGCTCTGAACAACATAACATCCGATGTGATAGTTATGTTCCAAACTGATTTATGAACATT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G13160.1	1	ARM repeat superfamily protein
Prunus persica	Prupe.1G240500.2.p	1	ARM repeat superfamily protein
Prunus persica	Prupe.1G240500.3.p	1	ARM repeat superfamily protein
Prunus persica	Prupe.1G240500.1.p	1	ARM repeat superfamily protein
Pyrus communis	PCP008578.1	1	-
Pyrus x bretschneideri	Pbr036214.1	1	-
Rosa multiflora	Rmu_sc0004638.1_g000008.1	1	-
Rosa multiflora	Rmu_sc0001084.1_g000021.1	0.949	-
Rubus occidentalis	Ro04_G22255	1	-
Vitis vinifera	GSVIVT01000585001	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.008G182900.1	1	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf01832g00006.1	1	Protein SDA1 homolog
Oryza sativa	LOC_Os04g53770.1	1	"SDA1, putative, expressed"
Zea mays	GRMZM2G121074_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0030036	actin cytoskeleton organization	biological_process
GO:0005488	binding	molecular_function
GO:0042273	ribosomal large subunit biogenesis	biological_process
GO:0000055	ribosomal large subunit export from nucleus	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08158.8	NUC130_3NT	89	140	5.50E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.31337
SRR5252888	dormant buds	no	dormant buds(0 month)	8.76116
SRR5252889	dormant buds	no	dormant buds(0 month)	9.68498
SRR5252886	dormant buds	no	dormant buds(1 months)	9.23805
SRR5252887	dormant buds	no	dormant buds(1 months)	7.383
SRR5252884	dormant buds	no	dormant buds(2 months)	14.4451
SRR5252882	dormant buds	no	dormant buds(3 months)	15.3544
SRR5252883	dormant buds	no	dormant buds(3 months)	8.36563
SRR5252880	dormant buds	no	dormant buds(4 months)	19.8963
SRR5252881	dormant buds	no	dormant buds(4 months)	19.5121
SRR5252878	bud break	no	bud break	7.44687
SRR5252879	bud break	no	bud break	9.38383
SRR3744766	flower	no	mature	4.32506
SRR3744767	flower	no	mature	4.28188
SRR3744768	flower	no	mature	3.93588
SRR6308190	stigmas	no	open flowers	0.891903
SRR6308181	styles	no	open flowers	1.23742
SRR6308188	filaments	no	open flowers	2.9411
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.84241
SRR6308192	pollen	no	open flowers	6.37364
SRR6308191	petals	no	open flowers	5.85616
SRR6308194	sepals	no	open flowers	4.8792
SRR6308193	receptacles	no	open flowers	4.44156
SRR6308189	ovaries	no	open flowers	2.23563
SRR3384922	fruit	no	1 week after full bloom	5.82465
SRR3384921	fruit	no	2 week after full bloom	4.36005
SRR3384920	fruit	no	3 week after full bloom	2.20955
SRR3384919	fruit	no	4 week after full bloom	4.26122
SRR3384923	fruit	no	5 week after full bloom	3.22735
SRR3384918	fruit	no	6 week after full bloom	2.37713
SRR3384917	fruit	no	8 week after full bloom	2.61297
SRR3384916	fruit	no	10 week after full bloom	2.96382
SRR3384915	fruit	no	12 week after full bloom	3.20704
SRR3384914	fruit	no	14 week after full bloom	3.51733
SRR3384913	fruit	no	16 week after full bloom	3.32111
SRR3384912	fruit	no	18 week after full bloom	3.21308
SRR3384911	fruit	no	19 week after full bloom	2.71192
SRR3384910	fruit	no	20 week after full bloom	3.23329
SRR768128	whole fruit	no	25 days post anthesis	2.44631
SRR768129	whole fruit	no	35 days post anthesis	3.68422
SRR768130	whole fruit	no	60 days post anthesis	2.31636
SRR768131	whole fruit	no	87 days post anthesis	3.19649
SRR7343308	immature fruit flesh	no	immature	3.93454
SRR7343309	immature fruit flesh	no	immature	7.33623
SRR6320494	ripe fruit flesh	no	mature	3.28868
SRR5405143	ripe fruit peel	no	mature	4.76199
SRR6320572	ripe fruit peel	no	mature	4.73167
SRR7403504	fruit	uninfected	mature	4.04428
SRR7403506	fruit	uninfected	mature	3.79561
SRR7403507	fruit	uninfected	mature	3.43556
SRR7403500	fruit	infected with penicillium expansum	mature	4.08111
SRR7403501	fruit	infected with penicillium expansum	mature	3.52253
SRR7403508	fruit	infected with penicillium expansum	mature	3.07396
SRR7403502	fruit	infected with penicillium expansum	mature	7.16431
SRR7403503	fruit	infected with penicillium expansum	mature	6.42465
SRR7403505	fruit	infected with penicillium expansum	mature	6.08621
SRR1613973	Central seeds	no	20DAPF	9.7094
SRR1613974	Central seeds	no	20DAPF	10.9865
SRR1613975	Central seeds	no	20DAPF	11.5815
SRR1613976	Lateral seeds	no	20DAPF	9.69212
SRR1613977	Lateral seeds	no	20DAPF	9.91784
SRR1613978	Lateral seeds	no	20DAPF	9.92818
SRR3744786	stem	no	mature	5.29443
SRR3744787	stem	no	mature	4.935
SRR3744772	stem	no	mature	5.39095
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.90921
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.00504
SRR1089478	leaf	Virus-free	plantlets	3.01809
SRR1089477	leaf	ASGV-infected	plantlets	3.94519
SRR767660	leaf	uninfected	fully developed	5.78543
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.33553
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.45516
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.4652
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.14264
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.71698
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.00159
SRR6308182	young leaf	no	immature leaves	10.2699
SRR3744769	leaf	no	mature	4.82505
SRR3744770	leaf	no	mature	4.73484
SRR3744771	leaf	no	mature	5.73033
SRR5405145	leaf	no	mature	6.4547
SRR6320561	leaf	no	mature	4.48016